Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3079 ATGATGGTTACTTTCGGTGGTGGTAGTGAAAATTTTGGAGGAAAAATGGTGAAGATGAAAGGTGGTGATGTGAGTGTGATGATCACAGAGTGGAAGGATATTCCAGTTGAACTTTTGATGAAAATATTGTCACTTTTGGATGATCAAATGGTGATTATAGCTTCTCATGTTTGTCATGGATGGAGAGATGCTATTTCTTTTGGTCTTTCTCGTTTATCACTCTCATGGTGTAGCAAGAATATGAATAACTTGGTCCTATCACTTGCTCCGAAGTTCACAAAACTGCAAACTCTAATCCTTCGTCAAGACAAGCCTCAACTAGAAGACAATGCTGTTGAGGCTGTTGCGAACTTTTGCCGTGACTTGCAGATTCTGGACCTCAGCAAAAGTTTCAAGCTTACCGATAGTTCGTTGTATGCTGTTGCCCTTGGTTGTCGTGATCTTACAAAACTTAACATTAGTGGCTGTTCAGCGTTTAGTGACAATGCTCTGGCTTACCTAGCCAGTTTATGCAGAAAGCTGAAAATTTTGAATCTGTGTGGTTGTGTTAAAGCTGTATCAGATACTGCATTACAGGCAATTGGACATTACTGCAATGAGTTACAGTCTTTGAACCTTGGATGGTGTGAACAAGTCAGTGATGTTGGAGTGATGAGTTTAGCATATGGATGTCCTGATCTTAGAACACTCGACTTATGTGGTTGTTTACTTATAACAGATGATAGCGTAATAGCCTTGGCAGATAGGTGTCCTCATCTGAGGTCACTTGGGCTGTACTTCTGCAAAAACATAACCGACAGAGCAATGTATTCATTGGCACAAAGCAAAGTGAACAACAAGATGTGGGGATCTGTTAATGGTGGAAATGAAGAAGATGGTTTGAGGACTTTGAACATTAGCCAGTGTACATCTCTCACCCCTTCTGCTGTTCAAGCTGTTTGCGACTCATCTCCTGCGCTTCACACATGCTCAGGAAGACATTCACTCATAATCAGTGGCTGTCTTAATCTTACATCAGTGCACTGTGCATGTTGTGTCCGGCCGCACAGTGCTATAAGCCCTTTCCCTCACTCAGCCCATTGA 1083 0.4201 MMVTFGGGSENFGGKMVKMKGGDVSVMITEWKDIPVELLMKILSLLDDQMVIIASHVCHGWRDAISFGLSRLSLSWCSKNMNNLVLSLAPKFTKLQTLILRQDKPQLEDNAVEAVANFCRDLQILDLSKSFKLTDSSLYAVALGCRDLTKLNISGCSAFSDNALAYLASLCRKLKILNLCGCVKAVSDTALQAIGHYCNELQSLNLGWCEQVSDVGVMSLAYGCPDLRTLDLCGCLLITDDSVIALADRCPHLRSLGLYFCKNITDRAMYSLAQSKVNNKMWGSVNGGNEEDGLRTLNISQCTSLTPSAVQAVCDSSPALHTCSGRHSLIISGCLNLTSVHCACCVRPHSAISPFPHSAH* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3079 360 Gene3D Ribonuclease Inhibitor 25 287 IPR032675 -
Tpr1g3079 360 Pfam Leucine Rich repeat 198 221 IPR001611 GO:0005515
Tpr1g3079 360 Pfam Leucine Rich repeat 250 273 IPR001611 GO:0005515
Tpr1g3079 360 Pfam Leucine Rich repeat 224 247 IPR001611 GO:0005515
Tpr1g3079 360 SUPERFAMILY F-box domain 31 66 IPR036047 GO:0005515
Tpr1g3079 360 PANTHER F-BOX SKP2A-LIKE PROTEIN 19 342 - -
Tpr1g3079 360 SUPERFAMILY RNI-like 66 274 - -
Tpr1g3079 360 Pfam F-box-like 32 65 IPR001810 GO:0005515
Tpr1g3079 360 SMART LRR_CC_2 291 316 IPR006553 -
Tpr1g3079 360 SMART LRR_CC_2 66 91 IPR006553 -
Tpr1g3079 360 SMART LRR_CC_2 250 275 IPR006553 -
Tpr1g3079 360 SMART LRR_CC_2 171 197 IPR006553 -
Tpr1g3079 360 SMART LRR_CC_2 119 144 IPR006553 -
Tpr1g3079 360 SMART LRR_CC_2 92 118 IPR006553 -
Tpr1g3079 360 SMART LRR_CC_2 224 249 IPR006553 -
Tpr1g3079 360 SMART LRR_CC_2 145 170 IPR006553 -
Tpr1g3079 360 SMART LRR_CC_2 198 223 IPR006553 -
Tpr1g3079 360 PANTHER UNCHARACTERIZED 19 342 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3079 K03875 - gmx:100793275 601.668
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3079 1 35309018 35312085 Tpr1g3079 1 35309018 35312085 ECH