Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02390 ATGAAGGAGTTGGGAATGAAGCTGTTGGAGCTTTTGGCACTTAGTTTGGGAGTGGATAGGTTGCATTATAAGGAGTTGTTTGAAGATGGATGTTCTGTAATGAGATGCAACTTCTACCCGTCATGCCAGGAGCCAAGTCTTGCACTTGGAACAGGACCACACTGTGACCCAACATCTCTCACCATTCTTCACCAAGACCAAGTTGGAGGGCTCGATGTGTTTGCAGACAACACGTGGCAGACGGTTCCGCCTCGTGCCCGTGCTCTTGTAGTTAACATTGGTGATACTTTCACGGCATTATCAAATGGGAGATACAAGAGTTGCCTGCATAGGGCAGTGGTTAACAAGTACAAAGAGAGGAGGTCCTTGGCATTCTTTCTGTGCCCGAAAGAAGACAAAGTTGTGAGAGCCCCAGAGGATATTGTGCGTAGGGATGGGACAAAACAGTATCCAGATTTCACATGGTCGAATTTGCTTGAATTCACACAAAACTACTACAGAGCCGACGAAGCTACACTGCACAACTTCACCAAGTGGTTGCTATCTTCCAAACAACAAACTCTTTAA 567 0.4621 MKELGMKLLELLALSLGVDRLHYKELFEDGCSVMRCNFYPSCQEPSLALGTGPHCDPTSLTILHQDQVGGLDVFADNTWQTVPPRARALVVNIGDTFTALSNGRYKSCLHRAVVNKYKERRSLAFFLCPKEDKVVRAPEDIVRRDGTKQYPDFTWSNLLEFTQNYYRADEATLHNFTKWLLSSKQQTL 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02390 188 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 30 129 IPR005123 -
Vimu1g02390 188 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 1 158 - -
Vimu1g02390 188 Pfam 2OG-Fe(II) oxygenase superfamily 32 129 IPR044861 -
Vimu1g02390 188 Gene3D - 1 161 IPR027443 -
Vimu1g02390 188 SUPERFAMILY Clavaminate synthase-like 1 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02390 Vimu-Chr1 34581566 34583029 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02390 4 167 Glycosyltransferase AT5G59530 34.132 2.72e-25 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02390 K05282 - gmx:100801187 359.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02390 1 34581566 34583029 Vimu1g02390 1 34581566 34583029 ECH