Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00992 ATGGCAAAAGTTTGTTGGCCATATTTTGATCCGGAGTATGAGAACTTCAGCAACAGAATCAACCCTCCAAGGGTCTCTGTGGACAATGATAGTTGCCATGCTTGTACACTAATCAAGTTTGATAGTATTAACAAACCTGGAATTCTGCTGGAAGTGGTGCAAATCCTGACAGACCTTGACTTCATAATTACAAAAGCTTACATATCTTCTGATGGTGGATGGTTTATGGATGTATTTCATGTCACCGATCAGCAAGGAAAGAAGATAACAGACAGCAAAACAATAGACTTCATTGAAAAGGCTCTAGGACCAAAGGGCCAGAGCACAGAAGGAGTGAAGAGTTGGCAAGGCAAAAGGGTTGGAGTTCACTCAATTGGTGATCATACAGCCATTGAACTTATTGGAAGGGATCGCCCGGGTCTCTTGTCTGAGATATCAGCAGTCCTTGCCAGCCTCCAATTCAATGTGATTGCTGCTGAAGTTTGGACTCATAACATGAGAATAGCTTGTGTCCTTTATGTCAATGATGCTACAAACCAAGCCATGGATGAATCAAAAAGATTGTCTATTATGGAGGAGCAGCTCAACCACATCCTACGCGTGTGTGAGGATGACGAGAAAGTGGCTAGGACCAGTTTCTCAATGGGTTTCACGCACATGGATCGCAGGCTCCACCAAATGCTATTTGCTGACAGGGACTACGAAAGTGCTGGAGTAACAACAACAGATTGTCCTCCTTCTTTTAGGCCAAAAATCAGAATAGAACGCATTGTGGAAAAAGGGTACTCAGTAGTTACTGTAAGATGCAAAGATCGAGCAAAATTGATGTTTGACATTGTTTGCACTCTCACCGACATGCAGTATGTGGTTTTCCATGCTACAATCTCATCAGAAGGGCAATATGCATCCCAGGAGTACTTTATCCGGCACATGGATGGATGCACGCTTGATACTGAAGGAGAGAAAGAAAGGGTCATCAAATGCATTGAAGCTGCCATTCAAAGAAGAGTTAGCGAGGGTGTGAGCCTTGAACTGTGTGCAAAGGACAGAGTGGGATTGCTGTCAGAAGTGACAAGGATTCTACGAGAAAATGGCTTAACAGTTAGTAGGGCAGGTGTGTCAACCATTGGAGAGAAAGGGCTAAATGTGTTCTACGTCAGAGATTCATCTGGGAACCCAGTGGACATGAAGATCATCGAAGCATTACGCAAGGAAATTGGACAAACAGTGATGGTCAATGTGAAGAGGGTACCTGGCAATGCTAAAGCACCAGCTGAAACCCGAGGATGGGCCAAAACAAGCTTCTTCTTTGGGAACTTGTTGGAAAGGTTCTTGACTTGA 1341 0.44 MAKVCWPYFDPEYENFSNRINPPRVSVDNDSCHACTLIKFDSINKPGILLEVVQILTDLDFIITKAYISSDGGWFMDVFHVTDQQGKKITDSKTIDFIEKALGPKGQSTEGVKSWQGKRVGVHSIGDHTAIELIGRDRPGLLSEISAVLASLQFNVIAAEVWTHNMRIACVLYVNDATNQAMDESKRLSIMEEQLNHILRVCEDDEKVARTSFSMGFTHMDRRLHQMLFADRDYESAGVTTTDCPPSFRPKIRIERIVEKGYSVVTVRCKDRAKLMFDIVCTLTDMQYVVFHATISSEGQYASQEYFIRHMDGCTLDTEGEKERVIKCIEAAIQRRVSEGVSLELCAKDRVGLLSEVTRILRENGLTVSRAGVSTIGEKGLNVFYVRDSSGNPVDMKIIEALRKEIGQTVMVNVKRVPGNAKAPAETRGWAKTSFFFGNLLERFLT 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00992 446 CDD ACT_ACR_3 262 336 - -
Viun8g00992 446 Coils Coil 174 194 - -
Viun8g00992 446 ProSiteProfiles ACT domain profile. 37 116 IPR002912 -
Viun8g00992 446 ProSiteProfiles ACT domain profile. 130 213 IPR002912 -
Viun8g00992 446 Pfam ACT domain 37 85 IPR002912 -
Viun8g00992 446 Pfam ACT domain 130 164 IPR002912 -
Viun8g00992 446 Pfam ACT domain 342 402 IPR002912 -
Viun8g00992 446 SUPERFAMILY ACT-like 125 203 IPR045865 -
Viun8g00992 446 SUPERFAMILY ACT-like 338 407 IPR045865 -
Viun8g00992 446 Gene3D - 128 212 - -
Viun8g00992 446 SUPERFAMILY ACT-like 32 106 IPR045865 -
Viun8g00992 446 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 10 415 IPR040217 -
Viun8g00992 446 ProSiteProfiles ACT domain profile. 342 419 IPR002912 -
Viun8g00992 446 CDD ACT_ACR_1 35 106 - -
Viun8g00992 446 CDD ACT_ACR_4 340 411 - -
Viun8g00992 446 Gene3D - 337 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00992 Viun-Chr8 11147982 11157887 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00992 - - gmx:100789044 856.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00992 8 11147982 11157887 Viun8g00992 8 11147982 11157887 ECH
Viun8g00992 8 11147982 11157887 Viun9g02294 9 32352198 32358583 PCT