Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1419 ATGAATTCTGGTTTCTTTATGGTGTCATCCCTGAAGCACCAAGAAGTTCAAAGCCGTTTCTTCGACCCCTCTTGGCTACAAATGCAGCAACACGTTCCCATGAGCTTCGTTTGGCCTAAGGAGTGTGTGGTGGACGCCAACGAGGAGTTTCAGGCCCCAATGGTGGACCTTGGAGGCTTCCTCAGAGGTGATGAAGAGGCCACACACGTTGCTGTTAAGCTCATACGCAAGGCATGCTCCACCCACGGCTTCTTCCAAGTATTCAACCACGGGGTTGATCATCTCCTCATTGCTCAAGCCTATGAACAAATGGATGCTTTTTTTAAGCTCCCAATTGACAGAAAAGTTAGTATTCGTAAGACTCCAGGTTCTGTCTGGGGCTATTCTGGTGCACATGCTGACCGATTCTCCTCCAAATTGCCTTGGAAAGAAACCCTCTCTTTCCCCTTCCATGATAACAACACCTTAGACCCCGTTGTCTCTACCTTCTTTAACTCCACCTTAGGACAAGACTTCCAACAAGCAGGAGTGGTATTTCAGAAATACTGCGAATCCATGAAGGGGTTGGGAATGAAGCTGTTGGAGCTTTTGGCACTTAGTTTGGGAGTCGATAGGTTGCATTATAAGGAGTTGTTTGAAGATGGATGTTCTGTAATGAGATGCAACTTCTACCCGTCATGCCAGGAGCCAAGTCTTGCACTTGGAACAGGACCACACTGTGACCCAACATCTCTCACCATTCTTCACCAAGACCAAGTTGGAGGGCTCGATGTGTTTGCAGACAACACGTGGCAGACGGTTCCGCCTCGTGCCCGTGCTCTTGTAGTTAACATTGGTGATACTTTCACGGCATTATCAAATGGGAGATACAAGAGTTGCCTGCATAGGGCAGTGGTTAACAAGTACAAAGAGAGGAGGTCCTTGGCATTCTTTCTGTGCCCGAAAGAAGACAAAGTGGTGAGAGCCCCAGAGGATATTGTGCGTAGGGATGGGACAAAACAGTATCCAGATTTCACATGGTCCAATTTGCTTGAATTCACACAAAACTACTACAGAGCCGACGAAGCTACACTGCACAACTTCACCAAGTGGTTGCTATCTTCCAAACAACAAACTCTTTAA 1122 0.4724 MNSGFFMVSSLKHQEVQSRFFDPSWLQMQQHVPMSFVWPKECVVDANEEFQAPMVDLGGFLRGDEEATHVAVKLIRKACSTHGFFQVFNHGVDHLLIAQAYEQMDAFFKLPIDRKVSIRKTPGSVWGYSGAHADRFSSKLPWKETLSFPFHDNNTLDPVVSTFFNSTLGQDFQQAGVVFQKYCESMKGLGMKLLELLALSLGVDRLHYKELFEDGCSVMRCNFYPSCQEPSLALGTGPHCDPTSLTILHQDQVGGLDVFADNTWQTVPPRARALVVNIGDTFTALSNGRYKSCLHRAVVNKYKERRSLAFFLCPKEDKVVRAPEDIVRRDGTKQYPDFTWSNLLEFTQNYYRADEATLHNFTKWLLSSKQQTL* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1419 373 PRINTS Isopenicillin N synthase signature 75 92 - -
Vra6g1419 373 PRINTS Isopenicillin N synthase signature 239 260 - -
Vra6g1419 373 PRINTS Isopenicillin N synthase signature 274 300 - -
Vra6g1419 373 PANTHER GIBBERELLIN 20-OXIDASE 12 368 - -
Vra6g1419 373 Pfam 2OG-Fe(II) oxygenase superfamily 217 314 IPR044861 -
Vra6g1419 373 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 215 314 IPR005123 -
Vra6g1419 373 Gene3D - 25 346 IPR027443 -
Vra6g1419 373 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 12 368 - -
Vra6g1419 373 SUPERFAMILY Clavaminate synthase-like 27 352 - -
Vra6g1419 373 Pfam non-haem dioxygenase in morphine synthesis N-terminal 53 151 IPR026992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1419 Vra-Chr6 27969394 27972320 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1419 31 352 Glycosyltransferase AT5G59530 26.706 1.38e-29 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1419 K05282 - gmx:100801187 671.389