Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00946 ATGGTGAATTCCATGGTCGAGCGCGCCACGAGCGACATGCTCATAGGGCCCGATTGGGCCATGAACATTGAGATCTGCGACATGCTCAATCATGACCCTGGGCAAGCAAAGGATGTCGTGAAAGGGATAAAGAAGAAGATTGGAAGTAAAAATTCAAAAGTTCAACTTCTTGCACTAACTTTGTTGGAGACAATCATAAAGAACTGTGGAGATATTGTTCATATGCATGTTGCAGAGAGAGATGTGCTTCATGATATGGTCAAAATAGTGAAGAAAAAGCCTGATTTTCATGTCAAAGAGAAGATATTGACTCTTATAGATACTTGGCAAGAAGCATTTGGAGGCCCGAGGGCAAGATATCCACAATATTTTGCTGCTTATCAGGAACTGTTGCGTGCTGGGGCAGTATTCCCTCAGAGATCGGAACAATCTGCACCTGTATTCACACCTCCACAAACACAGCCATTGGCGTCATACCCTCAAAATATACGTGACACGGATACTCGTCAGGACACAGCTGAATCCTCTGCTGAGTCTGAGTTTCCAACTCTAAGTTTGACAGAAATTCAGAATGCTCGTGGCATCATGGATGTTCTTGCAGAAATGCTCAATGCCTTAGATCCTAGCAACAAAGAAGGGATTAGACAGGAGGTTATTGTGGACTTGGTGGAGCAGTGTCGAACTTACAAGCAGAGAGTGGTACACCTTGTCAACTCAACTTCCGATGAATCACTGCTATGCCAAGGACTGGCCCTGAATGATGATCTGCAGCGTGTACTAGCCAAGCACGAATCTATTTCTTCGGGAACTCCCGCCCAAAACCAAAATCACACAGAAAATTCAAAACCTGCCCTTCCTGGAGCACTTGTAGATATAGATGCTCCTTTGGTTGATACTGGGGATACTAGCAGACAAACTAAAGAAAGACCCTCTTCTAATGTTGAAGCAGAATCCCAAACAATGAATCAGTTGCTGCTTCCTGCGCCTCCTACTTCTAATGGTTCAACAATTCCTGTTAAGGTTGACCCCAAATTGGACCTACTCAGTGGTGATGACTATAACTCTCCAAAGGCAGATGCTTCAAATGCTCTTGTTCCTGTGGGAGAACAACCACCTGCTAGTCCTGTTTCTCAGCAGAATGCCCTTGTTCTTTTTGATATGTTTTCCAATGGAAATAATGCACCTACATCTGTCAATAGCCAGCTGCCCCAGCCAGCCAATGTTGCTGGCCAAAGCACTCCATATACTCCCCAATTTCAGCAACAGCAAACAGTCATATCTCAAGGTGGATTTTACCCCAATGGAAATGTCCCAAATGCGGGTTCGCCTCAGTACGAGCAACAACCGCTGTATACACACGGTACAGGTCCTGCATGGAATGGTCAGGTTGCACAACAGCAGCAACAACCACCTTCGCCTATTTATGGTACGCAAAGCGGTGGATCATTGCCACCCCCTCCTTGGGAAGCTCAAGCAGCAGATAATGGAAGTTCAGTAGGTGGCGCTCAGTATCCATATGTGCAGAATGCTGCACATCCTCCAGGGTCTCAAACAATGGGCAATGAGCAGGGCGTTGGCATGTATATGCAGCCAAATGCTAACAGCCATATGCCAGGAATGCATAACCATGTTGGGAGCAATCAAATGGGCTTACATCCTCAGCATATACAAGGTGTTGCTGGGCCCTACATGGGTATGGCTTCACATCAAATGCAGGGTGGTCCTGTGATGTATCCTCAACAGATGTACGGAACCCAATTTATGGGATACGGTTATGATCATCAGCAACAAGGAGTTCCATATATTGAACGTCAAATGTATGGTATGTCTGTGAAAGATGACAGTGCCTTGAGAAACTCTTACACAGTTTCTACCACATCTTATGCTCCACCATCTGGGAAACCTTCCAAGCCAGAGGATAAGTTATTTGGTGACCTTGTTAACTTGGCAAAGGTGAAGCCCAATCCCACCCCAGGCCGAGCTGGTAGCATGTAA 1995 0.4581 MVNSMVERATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKKIGSKNSKVQLLALTLLETIIKNCGDIVHMHVAERDVLHDMVKIVKKKPDFHVKEKILTLIDTWQEAFGGPRARYPQYFAAYQELLRAGAVFPQRSEQSAPVFTPPQTQPLASYPQNIRDTDTRQDTAESSAESEFPTLSLTEIQNARGIMDVLAEMLNALDPSNKEGIRQEVIVDLVEQCRTYKQRVVHLVNSTSDESLLCQGLALNDDLQRVLAKHESISSGTPAQNQNHTENSKPALPGALVDIDAPLVDTGDTSRQTKERPSSNVEAESQTMNQLLLPAPPTSNGSTIPVKVDPKLDLLSGDDYNSPKADASNALVPVGEQPPASPVSQQNALVLFDMFSNGNNAPTSVNSQLPQPANVAGQSTPYTPQFQQQQTVISQGGFYPNGNVPNAGSPQYEQQPLYTHGTGPAWNGQVAQQQQQPPSPIYGTQSGGSLPPPPWEAQAADNGSSVGGAQYPYVQNAAHPPGSQTMGNEQGVGMYMQPNANSHMPGMHNHVGSNQMGLHPQHIQGVAGPYMGMASHQMQGGPVMYPQQMYGTQFMGYGYDHQQQGVPYIERQMYGMSVKDDSALRNSYTVSTTSYAPPSGKPSKPEDKLFGDLVNLAKVKPNPTPGRAGSM 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00946 664 SMART VHS_2 2 134 IPR002014 GO:0035091|GO:0043130
Viun8g00946 664 SUPERFAMILY ENTH/VHS domain 3 138 IPR008942 -
Viun8g00946 664 CDD GAT_GGA-like_plant 188 266 - -
Viun8g00946 664 MobiDBLite consensus disorder prediction 449 479 - -
Viun8g00946 664 MobiDBLite consensus disorder prediction 264 282 - -
Viun8g00946 664 FunFam TOM1-like protein 2 182 272 - -
Viun8g00946 664 Gene3D - 1 148 IPR008942 -
Viun8g00946 664 Gene3D - 183 275 IPR038425 -
Viun8g00946 664 MobiDBLite consensus disorder prediction 142 181 - -
Viun8g00946 664 MobiDBLite consensus disorder prediction 142 166 - -
Viun8g00946 664 MobiDBLite consensus disorder prediction 449 502 - -
Viun8g00946 664 Pfam VHS domain 3 115 IPR002014 GO:0035091|GO:0043130
Viun8g00946 664 CDD VHS 2 132 - -
Viun8g00946 664 PANTHER TOM1-LIKE PROTEIN 1 656 IPR044836 GO:0035091|GO:0043130|GO:0043328
Viun8g00946 664 FunFam TOM1-like protein 2 1 148 - -
Viun8g00946 664 MobiDBLite consensus disorder prediction 622 641 - -
Viun8g00946 664 ProSiteProfiles VHS domain profile. 9 138 IPR002014 GO:0035091|GO:0043130
Viun8g00946 664 ProSiteProfiles GAT domain profile. 180 268 IPR004152 GO:0035091|GO:0043130
Viun8g00946 664 Pfam GAT domain 194 268 IPR004152 GO:0035091|GO:0043130
Viun8g00946 664 SUPERFAMILY GAT-like domain 141 269 - -
Viun8g00946 664 MobiDBLite consensus disorder prediction 298 319 - -
Viun8g00946 664 MobiDBLite consensus disorder prediction 264 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00946 Viun-Chr8 10016482 10026936 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00946 - - gmx:732580 1132.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00946 8 10016482 10026936 Viun8g00946 8 10016482 10026936 ECH
Viun8g00946 8 10016482 10026936 Viun9g02304 9 32505213 32510420 PCT