Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0206 ATGGTTGGCAAGGAGAGTTTGAGAACTCATGAGGTCTTGAACTTTAGCTTTGAGAAGCTTATGATGGTTGACTGTGGTGGAAATAGTGGGAAAGGAGTGAACTTTAAAGCGGGGGTGATCACAGAATGGAAGGATATTCCAGTTGAGCTTTTGATGCAGATTTTGTCACTTGTGGATGATCAAACGGTTATGATAGCTTCTGAAGTTTGTCGTGGGTGGAGAGAGGCAATTTGCTTTGGCCTGACTCGGTTATCACTCTCATGGTGTAGCAAGAACATGAATAATTTGGTCCTATCCCTAGCTCCTAAATTCACAAAATTACAGACTTTAATCCTTCGTCAAGACAAGCCTCAACTAGAGGACAATGCTGTTGAAACTATTTCAAATTTTTGTCATGACCTCCAAATCTTGGACCTCAGCAAAAGTTTCAAGCTTACCGATCATTCGTTGTATGCCATAGCCCTTGGTTGTCAGGATCTTACAAAACTGAACATCAGTGGTTGTTCAGCCTTTAGTGACAATGCTCTGGCTTACCTGGCCAGTTTTTGTAGAAAGCTGAAAGTTTTGAATCTCTGTGGATGTGTTAAAGCTGCATCTGATACTGCGTTACAGGCAATTGGGCATTACTGCAATCAGTTACAGTTTTTGAACCTTGGATGGTGTGAAAATGTCAGCGATGTTGGAGTGATGAGTTTAGCATATGGCTGCCGTGATCTTAGAACACTCGATTTATGTGGTTGTGTCCTTATAACAGATGACAGTGTAATTGCCTTGGCAAACAGATGTCCTCATCTGAGGTCCCTTGGACTTTACTTCTGCCAAAACATCACAGACAGGGCAATGTATTCCTTGGCACAAAGCAAAGTGAACAACAGGATGTGGGGTTCTATGAAAGGTGGTGGAAATAATGATGATAATGATGATGGACTAAGAACTTTGAACATTAGCCAATGCACAGCACTCACCCCTTCTGCTGTGCAAGCTGTGTGTGACTCATGCCCTTCCCTCCACACCTGTTCTGGAAGACACTCACTCATCATGAGTGGTTGTCTGAATCTGACTTCTGTGCATTGTGCTTGTGCTGGCCAAGCACACCGTGCTTTCACTCTCCCACATGCAGCTCATTGA 1128 0.4335 MVGKESLRTHEVLNFSFEKLMMVDCGGNSGKGVNFKAGVITEWKDIPVELLMQILSLVDDQTVMIASEVCRGWREAICFGLTRLSLSWCSKNMNNLVLSLAPKFTKLQTLILRQDKPQLEDNAVETISNFCHDLQILDLSKSFKLTDHSLYAIALGCQDLTKLNISGCSAFSDNALAYLASFCRKLKVLNLCGCVKAASDTALQAIGHYCNQLQFLNLGWCENVSDVGVMSLAYGCRDLRTLDLCGCVLITDDSVIALANRCPHLRSLGLYFCQNITDRAMYSLAQSKVNNRMWGSMKGGGNNDDNDDGLRTLNISQCTALTPSAVQAVCDSCPSLHTCSGRHSLIMSGCLNLTSVHCACAGQAHRAFTLPHAAH* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0206 375 Pfam Leucine Rich repeat 262 285 IPR001611 GO:0005515
Gso13g0206 375 Pfam Leucine Rich repeat 210 233 IPR001611 GO:0005515
Gso13g0206 375 Pfam Leucine Rich repeat 236 259 IPR001611 GO:0005515
Gso13g0206 375 SUPERFAMILY RNI-like 70 286 - -
Gso13g0206 375 PANTHER UNCHARACTERIZED 1 357 - -
Gso13g0206 375 SUPERFAMILY F-box domain 43 84 IPR036047 GO:0005515
Gso13g0206 375 SMART LRR_CC_2 183 209 IPR006553 -
Gso13g0206 375 SMART LRR_CC_2 131 156 IPR006553 -
Gso13g0206 375 SMART LRR_CC_2 310 332 IPR006553 -
Gso13g0206 375 SMART LRR_CC_2 78 103 IPR006553 -
Gso13g0206 375 SMART LRR_CC_2 104 130 IPR006553 -
Gso13g0206 375 SMART LRR_CC_2 262 287 IPR006553 -
Gso13g0206 375 SMART LRR_CC_2 157 182 IPR006553 -
Gso13g0206 375 SMART LRR_CC_2 210 235 IPR006553 -
Gso13g0206 375 SMART LRR_CC_2 236 261 IPR006553 -
Gso13g0206 375 Pfam F-box-like 44 77 IPR001810 GO:0005515
Gso13g0206 375 PANTHER F-BOX SKP2A-LIKE PROTEIN 1 357 - -
Gso13g0206 375 Gene3D Ribonuclease Inhibitor 38 299 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0206 Gso-Chr13 11423294 11427599 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0206 K03875 - gmx:121173056 758.059
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1266 14 33325751 33330351 Gso13g0206 13 11423294 11427599 GST
Gso13g0206 13 11423294 11427599 Gso4g2031 4 50683883 50687412 PCT
Gso13g0206 13 11423294 11427599 Gso6g1018 6 9908863 9912402 PCT
Gso4g2031 4 50683883 50687412 Gso13g0206 13 11423294 11427599 PCT
Gso6g1018 6 9908863 9912402 Gso13g0206 13 11423294 11427599 PCT