Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g3121 ATGGTGAATTCTATGGTGGAACGCGCCACGAGCGACATGCTCATCGGACCCGATTGGGCCATGAACATCGAGATCTGTGACATGCTCAATCGTGACCCTGGGCAAGCAAAGGATATTGTTAAAGGTATAAAGAAGCGGATTGGAAGTAAAAACTCAAAAGTCCAGCTACTTGCTCTAACTTTACTGGAGACAATCATAAAGAACTGCGGAGACATTGTTCACATGCATGTTGCAGAGAAAGATGTGCTTCATGAGATGGTGAAAATAGCAAAGAAGAAGCCTGATTTTCATGTCAAAGAGAAGATACTGATTCTTGTAGATACATGGCAAGAAGCCTTTGGAGGTCCCCGATCAAGATATCCGCAGTATTATGCTGCATACCAGGAACTGCTGCGTGCTGGGGCAGTATTTCCCCAGAGATCTGAGCAATCTGCACCGGTGTTCACACCTCCACAAACACAGCCATTAGCATCATACCCTCCAAACATACGTGACTCTGATACTCGGCAGGACACAGCTGGTTCCTCTGCAGAGTCTGAGTTTCCAACATTAACTCTGACCGAAATTCAGAATGCACGGGGTATTATGGATGTTCTCTCAGAAATGCTAAATGCATTAGACCCTAGTAATAAAGAAGGTCTTAGGCAGGAGGTTATTGTTGACTTGGTGGAGCAGTGYCGAACATACAAACAGAGAGTGGTACACCTTGTTAACTCAACTTCTGATGAATCACTGCTTTGCCAAGGACTAGCTCTGAATGATGATCTGCAGCGTGTACTTGCCAAGCATGAATCTATTTTGTCAGGAACTCCTACTCAGAATCAAAAACCCCCAGAGAATTCAAAGCCTGCAACTGCTGGAGCACTTCTAGATGTTGATGCTCCTTTGGTTGATACTGGAAATTCTAGCAAACAAATTGATAGAAGCTCCCCTCCTAGTGCTGAAGCAGGATCCTCAACATTGAATCAGTTATTGCTTCCTGCACCCCCCACMGCCAATGGTTCAACCATCCCTGCCAAGGTTGATCCCAAATTCGACCTGCTCAGTGGTGATGACTATGCCTCACCAAAAGCAGATACTTCACTTGCTCTTGTTTCTCTTGGAGAACAACAGCCTGCTACTCCTGTGAATCAGCAGAATGCCCTTGTTCCTTTTGATGTGTTTTCTAATGGTAATAATGCAGCAGCGGCTACACCTGTCAGTACTCAGCTAAACCAGCCACCTAATTTTGCTGGCCAAACCAGTCAGATTCCTACCCAATTTCAACAACAGCAGAGTTTTGTATCTCAAGGTGGATTTTACCCCCAAGGAAGTGCACCAAATGCAGGGTCACCTCAGTATGAGCAGTCACTCTATACACAAAGTTCAGGTCCCGCCTGGAATGGTCAGGTTGCACAGCAGCCACAGCCATCTTCGCCTGTTTATGGCACACAAAACACTGGATCACTGCCGCCACCTCCCTGGGAAGCTCAAGCGGCAGATAATGGCAGTCCAGCTGCAAGCACTCCATTTCCGCAACCACCACAAGTTAGTCAAGTGATGATGACAAATGGCGCCGCAAATTCTCAGGGCCCTCAAACAATGGGCAATGGCCAGGTTGCTGGAATATATATGCAGCCAACTGCCAACAGTTATACGCCAGCAATCAATAACCATGTTGGTCAACACAATCAATTCGGCATGCATCCTCAACATATTCAAGGCGTGGCAGGGCCCTACATGGGTGGTATGATGCCAAATCAAATGCAAGCTGGTCCAGTGGCTTCCATGTATCCTCAACAAATGTACGGAAATCAATTTATGGGATACGGCTATGGTCAGCAACAAGGAGTTCCATATATTGAGCACCAAATGTATGGTTTATCTGTTAGAGATGATGGTGGTTTAAGAAGCTCTTACCAGTCTTCTACTACATCTTATGCTCCATCTGGGAAGCCTTCCAAGCCAGAAGATAAGCTATTTGGTGACCTTGTTGACATGGCAAAGGTGAAGCCGAAACCTGCTCCAGGTCGAGCTGGTAGCATGTAA 2028 0.462 MVNSMVERATSDMLIGPDWAMNIEICDMLNRDPGQAKDIVKGIKKRIGSKNSKVQLLALTLLETIIKNCGDIVHMHVAEKDVLHEMVKIAKKKPDFHVKEKILILVDTWQEAFGGPRSRYPQYYAAYQELLRAGAVFPQRSEQSAPVFTPPQTQPLASYPPNIRDSDTRQDTAGSSAESEFPTLTLTEIQNARGIMDVLSEMLNALDPSNKEGLRQEVIVDLVEQCRTYKQRVVHLVNSTSDESLLCQGLALNDDLQRVLAKHESILSGTPTQNQKPPENSKPATAGALLDVDAPLVDTGNSSKQIDRSSPPSAEAGSSTLNQLLLPAPPTANGSTIPAKVDPKFDLLSGDDYASPKADTSLALVSLGEQQPATPVNQQNALVPFDVFSNGNNAAAATPVSTQLNQPPNFAGQTSQIPTQFQQQQSFVSQGGFYPQGSAPNAGSPQYEQSLYTQSSGPAWNGQVAQQPQPSSPVYGTQNTGSLPPPPWEAQAADNGSPAASTPFPQPPQVSQVMMTNGAANSQGPQTMGNGQVAGIYMQPTANSYTPAINNHVGQHNQFGMHPQHIQGVAGPYMGGMMPNQMQAGPVASMYPQQMYGNQFMGYGYGQQQGVPYIEHQMYGLSVRDDGGLRSSYQSSTTSYAPSGKPSKPEDKLFGDLVDMAKVKPKPAPGRAGSM* 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g3121 675 ProSiteProfiles GAT domain profile. 180 268 IPR004152 GO:0035091|GO:0043130
Amo06g3121 675 MobiDBLite consensus disorder prediction 629 644 - -
Amo06g3121 675 Pfam VHS domain 3 130 IPR002014 GO:0035091|GO:0043130
Amo06g3121 675 MobiDBLite consensus disorder prediction 142 179 - -
Amo06g3121 675 Pfam GAT domain 194 269 IPR004152 GO:0035091|GO:0043130
Amo06g3121 675 PANTHER TOM1-LIKE PROTEIN 1 669 IPR044836 GO:0035091|GO:0043130|GO:0043328
Amo06g3121 675 MobiDBLite consensus disorder prediction 266 285 - -
Amo06g3121 675 MobiDBLite consensus disorder prediction 296 318 - -
Amo06g3121 675 SUPERFAMILY ENTH/VHS domain 3 138 IPR008942 -
Amo06g3121 675 CDD VHS 2 132 - -
Amo06g3121 675 CDD GAT_GGA_like_plant 188 266 - -
Amo06g3121 675 Gene3D - 183 275 IPR038425 -
Amo06g3121 675 MobiDBLite consensus disorder prediction 629 675 - -
Amo06g3121 675 Gene3D - 1 148 IPR008942 -
Amo06g3121 675 SMART VHS_2 2 134 IPR002014 GO:0035091|GO:0043130
Amo06g3121 675 ProSiteProfiles VHS domain profile. 9 138 IPR002014 GO:0035091|GO:0043130
Amo06g3121 675 MobiDBLite consensus disorder prediction 298 318 - -
Amo06g3121 675 MobiDBLite consensus disorder prediction 400 485 - -
Amo06g3121 675 MobiDBLite consensus disorder prediction 400 507 - -
Amo06g3121 675 SUPERFAMILY GAT-like domain 141 269 - -
Amo06g3121 675 MobiDBLite consensus disorder prediction 266 281 - -
Amo06g3121 675 PANTHER TARGET OF MYB PROTEIN 1 1 669 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g3121 Amo-Chr6 98324835 98331899 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g3121 - - gmx:100809022 1013.83