Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1420 ATGGCTAACAATGCATCAGCCTGTGCTGAGAGGGCAACCAGTGACATGCTGATTGGGCCAGACTGGGCAATTAACATAGAGTTGTGTGATATCATTAATATGGACCCTAGTGTGTTTCAGATCATTGAGCGGGATATCTTACATGACATGGTTAAAATAGTGAAGAAGAAGCCTGATTTAAGTGTGAGGGAAAAGATATTGACTTTGATTGATACATGGCAAGAAGCTTTTGGTGGACCAAACGGAAAGTATCCCCAATACCATGCAGCATATAATGAATTAAAGTCTGCTGGTGTTGAATTTCCCCCACGAGAAGAGAATAGTGTTCCTTTCTTCACGCCTCCCCAAAGCCAGTCAGTTGCTCATATTGCTGCTGCAGAATATGACGCTGCTGCTATTCAGGCTTCTATTCAGTCTGATGCATCTGGCCTTAGTTTGCCAGAGATTCAGAATGCTCAAGGACTAGCAGATGTATTGAGTGAAATGCTTAATGCCTTGGATCCTAAAAGTCCTGAGGTTGTGAAGCAGGAGGTGATTGTTGACCTTGTTGACCAATGTCGTTCTTACCAAAAGCGTGTCATGCTTCTTGTGAATGAGACTATGGATGAGCAACTTTTATGTCAGGGGTTGGCACTGAATGACAGTCTTCAGCGAGTGCTTAGTGAACATGACAATATTGTGAAAGCAACTCCTGTTACAGTCACAAGAGGAGTAGAAACACCAGTTCTGCCACCTGTAAATGTAAAGAATGAAGAGGAAGAAGAGTCAGACGATGATTTTGCCCAACTAGCCCATAGGTCATCACGTGGTATCAATGCACAGAGACGGAAACAAGTCAATAACAATGTACAACCAGTGAGAGTAAACCCAATTCTTCCCCCACCACCGCCACCAAAGAAACCAGTGTACTCTGATACTGGTATGATTGATTTTCTCAGTGGTGATGTGTACAAAATAGAAGAATCCCATGAACTTTCTGAACCAACTTCACATGTCGAGCCCCTTCATTCTAGTTCCAATAATCCTGCCTCAGCCACTAGAACACTGTCTTCCTCTCCGCCTTGTTCTTCAAGTATCTCATCACCAATTTTAAGCAAGCAGCCTGTGTTTGATGAAACATCTGTCATCAATAAATCCTCGGAAATCCTTACACCAACTCCTCGGGAAACACAATCTTCTGGCTCCCTTCCACAACCCCCTTCAATGTTTTATCCGAGACAACAGTTTTCTGAGCAACAAGGTGTGTCTCCTTTGAGTTTTGGTTCCAGTTCCTCAAATGACAACTTGTTGGAACAAACCCAGAATCTATCTATGTATTCGTCTACTCCAACAAAACAAGAGAAGCCAGAAGATGTCCTTTTTAAAGATCTACTGGACTTTGCAAAATCCAAAACCCCTTCTAAACCCAGTAGTAGGCCATTTTGA 1425 0.4281 MANNASACAERATSDMLIGPDWAINIELCDIINMDPSVFQIIERDILHDMVKIVKKKPDLSVREKILTLIDTWQEAFGGPNGKYPQYHAAYNELKSAGVEFPPREENSVPFFTPPQSQSVAHIAAAEYDAAAIQASIQSDASGLSLPEIQNAQGLADVLSEMLNALDPKSPEVVKQEVIVDLVDQCRSYQKRVMLLVNETMDEQLLCQGLALNDSLQRVLSEHDNIVKATPVTVTRGVETPVLPPVNVKNEEEEESDDDFAQLAHRSSRGINAQRRKQVNNNVQPVRVNPILPPPPPPKKPVYSDTGMIDFLSGDVYKIEESHELSEPTSHVEPLHSSSNNPASATRTLSSSPPCSSSISSPILSKQPVFDETSVINKSSEILTPTPRETQSSGSLPQPPSMFYPRQQFSEQQGVSPLSFGSSSSNDNLLEQTQNLSMYSSTPTKQEKPEDVLFKDLLDFAKSKTPSKPSSRPF* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1420 474 MobiDBLite consensus disorder prediction 322 363 - -
Vra6g1420 474 MobiDBLite consensus disorder prediction 379 450 - -
Vra6g1420 474 SUPERFAMILY ENTH/VHS domain 7 103 IPR008942 -
Vra6g1420 474 SMART VHS_2 5 98 IPR002014 GO:0035091|GO:0043130
Vra6g1420 474 MobiDBLite consensus disorder prediction 331 363 - -
Vra6g1420 474 MobiDBLite consensus disorder prediction 379 447 - -
Vra6g1420 474 CDD GAT_GGA_like_plant 148 226 - -
Vra6g1420 474 Gene3D - 140 235 IPR038425 -
Vra6g1420 474 ProSiteProfiles VHS domain profile. 12 37 IPR002014 GO:0035091|GO:0043130
Vra6g1420 474 Pfam GAT domain 155 228 IPR004152 GO:0035091|GO:0043130
Vra6g1420 474 MobiDBLite consensus disorder prediction 288 302 - -
Vra6g1420 474 ProSiteProfiles VHS domain profile. 40 102 IPR002014 GO:0035091|GO:0043130
Vra6g1420 474 Gene3D - 3 37 IPR008942 -
Vra6g1420 474 SUPERFAMILY GAT-like domain 106 228 - -
Vra6g1420 474 CDD VHS 10 96 - -
Vra6g1420 474 ProSiteProfiles GAT domain profile. 140 228 IPR004152 GO:0035091|GO:0043130
Vra6g1420 474 PANTHER TOM1-LIKE PROTEIN 40 469 IPR044836 GO:0035091|GO:0043130|GO:0043328
Vra6g1420 474 PANTHER TOM1-LIKE PROTEIN 1 37 IPR044836 GO:0035091|GO:0043130|GO:0043328
Vra6g1420 474 MobiDBLite consensus disorder prediction 267 307 - -
Vra6g1420 474 PANTHER TOM1-LIKE PROTEIN 4 40 469 - -
Vra6g1420 474 PANTHER TOM1-LIKE PROTEIN 4 1 37 - -
Vra6g1420 474 Gene3D - 38 112 IPR008942 -
Vra6g1420 474 MobiDBLite consensus disorder prediction 267 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1420 Vra-Chr6 28002714 28010171 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1420 - - gmx:100779405 582.022