LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci2g0354	ATGAGGCGATTGGAGGACGGCGTGGTTCAGACTGGGAGTGAAATGGTGGGGAAGGAGACCTTGAGGACCGAGGGCTTGAACTCGTGCTTTGAGAAGCTCGTGATGATTGCTGGCGGCGGACAAGGTGGTAACGGAGTGAAAATGGAGGGCGGGCCGAATTCAGAATGGAAAGATATTCCGGTGGAACTTTTGATGCAAATATTGGGCCCCGTGGATGATCGGACTGTGATCGCCGCTTCTGGTGTCTGTCGAGGGTGGAGAGAAGCTATTTGCTTTGGCCTCACCCGTTTATCACTCTCATGGTGCAGCAAGAATATGAATAATTTGGTCCTATTTCTTGCCCCTAAATTCTCAAAATTGCAAACTTTAATCCTTCGTCAAGCGAAGCCCCAGCTGGAGGACACCGCTGTTGACGCCATTGCAAACTCCTGTCATGATCTGCAGATCCTGGACCTGAGCAAAAGTTTCAAGCTGACCGATCGTTCACTGTATGCCTTAGCCCACGGTTGTCCTGATCTCACAAAACTGAATGTCAGTGGGTGCTCAGCATTCAGCGACACTGCTCTGGCTTACCTGGCCAGCTGCTGCAAAAAATTGAGGGTCTTAAATCTCTGTGGATGCGTGAAAGCTGCATCCGACGCTGCACTGCAGGCGATCGGACGGTACTGCAATGAGTTGCAGTCTTTGAACCTAGGATGGTGCGAAAATGTGGGTGATGATGGGGTGATGAGTCTAGCCCAAGGGTGCCCTGATCTTAGAACACTGGACTTGTGCGGTTGCATCTGTATAACAGATGATAGCGTGATAGCATTGGCAAACGGATGCCCTCATCTGTGGTCTTTGGGGCTGTACTACTGCCAAAACATCACGGACAGGTCAATGTATTGCTTGGCTCACAGCAAAGTGAGGCACAGGACATGGGGATCAGTGAAAGGGGGCAATCAGGAGGATGGGCTAAGGACTCTGAACATAAGCCAATGCACGGCACTCACGCCCTCGGCGGTTCAGGCAGTGTGTGACTCATTCCCAGCTCTGCACACATGCTCCGGCAGGCATTCCCTCATCATGAGTGGCTGTCTCAGCTTGACGTCAGTGCACTGTGCCTGTGCCGGCGAGGCACATCGTGCCATCAATGCTTTTCCTCATCCGGCACGTTGA	1158	0.5216	MRRLEDGVVQTGSEMVGKETLRTEGLNSCFEKLVMIAGGGQGGNGVKMEGGPNSEWKDIPVELLMQILGPVDDRTVIAASGVCRGWREAICFGLTRLSLSWCSKNMNNLVLFLAPKFSKLQTLILRQAKPQLEDTAVDAIANSCHDLQILDLSKSFKLTDRSLYALAHGCPDLTKLNVSGCSAFSDTALAYLASCCKKLRVLNLCGCVKAASDAALQAIGRYCNELQSLNLGWCENVGDDGVMSLAQGCPDLRTLDLCGCICITDDSVIALANGCPHLWSLGLYYCQNITDRSMYCLAHSKVRHRTWGSVKGGNQEDGLRTLNISQCTALTPSAVQAVCDSFPALHTCSGRHSLIMSGCLSLTSVHCACAGEAHRAINAFPHPAR	385

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci2g0354	385	SUPERFAMILY	F-box domain	45	91	IPR036047	GO:0005515
	Prci2g0354	385	SMART	LRR_CC_2	316	341	IPR006553	-
	Prci2g0354	385	SMART	LRR_CC_2	91	116	IPR006553	-
	Prci2g0354	385	SMART	LRR_CC_2	117	143	IPR006553	-
	Prci2g0354	385	SMART	LRR_CC_2	275	300	IPR006553	-
	Prci2g0354	385	SMART	LRR_CC_2	196	222	IPR006553	-
	Prci2g0354	385	SMART	LRR_CC_2	223	248	IPR006553	-
	Prci2g0354	385	SMART	LRR_CC_2	249	274	IPR006553	-
	Prci2g0354	385	SMART	LRR_CC_2	144	169	IPR006553	-
	Prci2g0354	385	SMART	LRR_CC_2	170	195	IPR006553	-
	Prci2g0354	385	Gene3D	Ribonuclease Inhibitor	88	304	IPR032675	-
	Prci2g0354	385	SUPERFAMILY	RNI-like	90	299	-	-
	Prci2g0354	385	PANTHER	UNCHARACTERIZED	237	365	-	-
	Prci2g0354	385	Pfam	Leucine Rich repeat	223	246	IPR001611	GO:0005515
	Prci2g0354	385	CDD	F-box_AtSKP2-like	55	102	-	-
	Prci2g0354	385	FunFam	F-box protein SKP2B	91	309	-	-
	Prci2g0354	385	Gene3D	-	55	87	-	-
	Prci2g0354	385	Pfam	F-box-like	57	90	IPR001810	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci2g0354	Prci-Chr2	2526031	2528788	Dispersed/Tandem

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci2g0354	K03875		-	gmx:100818928	607.831

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Prci2g0354	2	2526031	2528788	Prci15g0385	15	2530464	2534404	CCT
	Prci2g0354	2	2526031	2528788	Prci2g0354	2	2526031	2528788	ECH