Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0201 ATGGCTAACAATGCAGCAGCCTGTGCTGAGAGAGCAACTAGTGACATGCTGATTGGTCCAGACTGGGCAATTAACATAGAGTTGTGTGATATAATTAATATGGACCCTAGGCAAGCAAAGGATGCAATAAAGATACTTAAGAAGCGTTTGAGCAGTAAAAATCCCCAAATACAACTTTTGGCTCTTTTTCCAGACTTACGTGTGAGGGAAAAGATATTGATTTTGATTGATACATGGCAAGAAGCTTTTGGAGGACCAAGTGGAAAATATCCACAGTACCTTGCAGCATATAATGAATTAAAGTCTGCTGGAGTTGAATTTCCCCCACGAGAAGAGAATAGTGCTCCTTTCTTCACTCCTCCCCAAACCCTGCCAGTTCATCTTGCTGCTGCAGAATATGATGATGCTTCTATTCAGGCTTCTCTTCATTCAGATGCATCTGGCCTTAGTTTGCCAGAGATCCAGAATGCTCAAGGGCTGGCAGATGTATTGACTGAAATGGTTAATGCCTTGGATCCTAAAAATCCTGAGGTTGAGAACCAGGAGGTGATTGCTGAACTTGTTGACCAGTGTCGCTCATACCAAAAGCGTGTTATGCTTCTTGTAAATGAGACTTCGGATGAGCAGCTTTTAGGTCAGGGATTGGCACTGAATGACAGTCTTCAGCGAGTGCTTTGTCAACATGACAATATTGTAAAAGGAACTCCAGATACAGGCACAAGAGGAACAGAAACGTCAACTCTGCCACTTGTATATGTAACCAATGAAGAGGATGAGTCAGACGTTGATTTTGCCCAACTAGCCCATAGGTCCTCACGAGATACGAATGCACAGAGAGCCAATGCCAAGGCAGAACCCGTGAGAGTAAACCCAATTCTTCCTCCACCACCAGCACCAAAGAAACCAATCTTCACAGATGCTGGTATGATTGACTATCTCAGTGGTGATGCATACAAAACAGAAGCATCCCATGAACAATCTGAACCAACTTCATATGCCGTGCCCCTTCATTCTAGTCCTACTAATCCTGCCTCAACCGCTGCAACACTATCTTCCTCTCCACCTTATTCCCCAAGTACTCCATCGCGAATTTTAAGCAAACAGCCTGTGTATGATGAACCACCTCCCATCAATAAATCCTCAGAAAGCCTTCCTCTATCTCCCTTGGAAACACAATCTCCAGGCTTCCTTCTGCCGCCCCCTTCAAGCTATAATCAGAGACAGCAGTTTTTTGAGCAACAAGGTGTTCCTCATTCAAGTTCTGGGTTCAGTTCCGCAGATGACAGCTTGTTGGCACAAACCCAGAATTTGTCTCTGAATTCATCTACTCCAACCAAACAAGAGAAGACAGAAGATGTCCTTTTTAAAGATCTAGTTGACTTTGCAAAATCTAAAACCTCATCCTCTTCCAAACCCAGTAGGCCATTTTGA 1431 0.4382 MANNAAACAERATSDMLIGPDWAINIELCDIINMDPRQAKDAIKILKKRLSSKNPQIQLLALFPDLRVREKILILIDTWQEAFGGPSGKYPQYLAAYNELKSAGVEFPPREENSAPFFTPPQTLPVHLAAAEYDDASIQASLHSDASGLSLPEIQNAQGLADVLTEMVNALDPKNPEVENQEVIAELVDQCRSYQKRVMLLVNETSDEQLLGQGLALNDSLQRVLCQHDNIVKGTPDTGTRGTETSTLPLVYVTNEEDESDVDFAQLAHRSSRDTNAQRANAKAEPVRVNPILPPPPAPKKPIFTDAGMIDYLSGDAYKTEASHEQSEPTSYAVPLHSSPTNPASTAATLSSSPPYSPSTPSRILSKQPVYDEPPPINKSSESLPLSPLETQSPGFLLPPPSSYNQRQQFFEQQGVPHSSSGFSSADDSLLAQTQNLSLNSSTPTKQEKTEDVLFKDLVDFAKSKTSSSSKPSRPF* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0201 476 SMART VHS_2 5 104 IPR002014 GO:0035091|GO:0043130
Gso13g0201 476 ProSiteProfiles VHS domain profile. 12 108 IPR002014 GO:0035091|GO:0043130
Gso13g0201 476 SUPERFAMILY GAT-like domain 111 234 - -
Gso13g0201 476 Gene3D - 3 63 IPR008942 -
Gso13g0201 476 CDD VHS 10 102 - -
Gso13g0201 476 MobiDBLite consensus disorder prediction 380 429 - -
Gso13g0201 476 Gene3D - 144 240 IPR038425 -
Gso13g0201 476 MobiDBLite consensus disorder prediction 319 429 - -
Gso13g0201 476 ProSiteProfiles GAT domain profile. 145 233 IPR004152 GO:0035091|GO:0043130
Gso13g0201 476 MobiDBLite consensus disorder prediction 324 366 - -
Gso13g0201 476 Pfam VHS domain 9 62 IPR002014 GO:0035091|GO:0043130
Gso13g0201 476 MobiDBLite consensus disorder prediction 270 305 - -
Gso13g0201 476 PANTHER TOM1-LIKE PROTEIN 64 474 IPR044836 GO:0035091|GO:0043130|GO:0043328
Gso13g0201 476 PANTHER TOM1-LIKE PROTEIN 1 63 IPR044836 GO:0035091|GO:0043130|GO:0043328
Gso13g0201 476 PIRSF TOM1 1 64 IPR014645 -
Gso13g0201 476 PIRSF TOM1 63 474 IPR014645 -
Gso13g0201 476 Pfam GAT domain 160 234 IPR004152 GO:0035091|GO:0043130
Gso13g0201 476 SUPERFAMILY ENTH/VHS domain 8 109 IPR008942 -
Gso13g0201 476 PANTHER TOM1-LIKE PROTEIN 4 1 63 - -
Gso13g0201 476 PANTHER TOM1-LIKE PROTEIN 4 64 474 - -
Gso13g0201 476 Gene3D - 64 119 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0201 Gso-Chr13 11160725 11168839 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0201 - - gmx:100779405 832.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0201 13 11160725 11168839 Gso4g2040 4 50778486 50793999 PCT
Gso13g0201 13 11160725 11168839 Gso6g1011 6 9814857 9822253 PCT
Gso4g2040 4 50778486 50793999 Gso13g0201 13 11160725 11168839 PCT
Gso6g1011 6 9814857 9822253 Gso13g0201 13 11160725 11168839 PCT