Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0677 ATGGAGGTTGCTGTTGGGCAAGCAAAGGATGCAATAAAGATACTTAAGAAGCAATTGAGCAGTAAAAATCCCAAAATTCAACTTCTGGCTCTTTTTGCACTGGAAACCCTTAGTAAAAATTGTGGTGACAGTGTATTTCAACAGATCATTGAGCGGGATATCTTACGTGACATGGTTAAAATAGTGAAGAAGAAGCCTGATTTAAGTGTGAGGGAAAAGATATTGACTTTGATTGATACATGGCAAGAAGCTTTTGGTGGACCAAATGGAAGGTATCCCCAATACCATGCAGCATATAATGAATTAAAGTCTGCTGGTGTTGAATTTCCCCCACGAGAAGAGAATAGTGTTCCTTTCTTCACTCCTCCACAAACCCAGTCAGTTGCTCATATTGCTGCAGAAGAATATGCTGCTGCTGCTATTCAGTCTGAAGCATCTGGCCTTAGTTTGCCAGAGATTCAGAATGCTCAAGGACTAGCAGATGTATTGAGTGAAATTCTTAATGCCTTGGATCCTAAAAGTCCCGAGGTTGTGAAGCAGGAGGTGATTGTTGACCTTGTTGACCAGTGTCGTTCTTACCAAAAGCGTGTCATGCTTCTTGTGAATGAGACTGTGGATGAGCAACTTTTATGTCAGGGGTTGGCACTGAATGACAGTCTTCAACAAGTTCTTAATCAACATGAGAACATTGTAAAAGCAACTCCTGTTACAGGCACAAGAGGAGTAGAAACATCAAGTCTGCCACCTGTAAATGTAAAGAATGAAGAGGACGACGAGTCAGAGGATGATTTTGCCCAACTAGCCCATAGGTCATCACGAGATACTAATACACAGAGACGGAAACAAGTCAATGAGAAGGTAGAAGCAGTGAGAATAAACCGAATTCTTCCCCCACCACCTGCACCAAAGAAACCAGTGTCCTCTGATGCTGGTATGATTGATTATCTCAGTGGTGATGTGTACAAAATAGAAGAATCCCATGAACTCTCTGAGCCAACATCTTATGTTGAACCCTTTCATTCCAGTTCCAATAATCCTGCCTCAACCACTAGAACACTGTCTTCATCTCCGCCTTGTTCCCCAAGTACCTCATCACCAAGTTTAAGCAAGCAGCCTGTGTCTGATGAAACATCTGTCATCAATAAATCCTCAGAAATCCTTACTCCAACTCCTCAGGAAACACAATCTCCTGGCTTCCTTCCACAACCCCCTTCAATGTTTTATCCGAGACAACAGTTTTCTGAGCAACAAGGTGTGTCTCATCCAAGTTTTGGGTCCAGTTCCTCAAATGACAACTTGTTGGTACAAACCCAGAATCTATCTCTGAATTCGTCTACTCCAATCAAACAAGAGAAGCCAGAAGAGGTCCTTTTTAAGGATCTACTTGACTTTGCAAAATCCAAAACCTCATCACCTTCTAAACCCAGCAGTAGGCCATTTTAA 1443 0.4213 MEVAVGQAKDAIKILKKQLSSKNPKIQLLALFALETLSKNCGDSVFQQIIERDILRDMVKIVKKKPDLSVREKILTLIDTWQEAFGGPNGRYPQYHAAYNELKSAGVEFPPREENSVPFFTPPQTQSVAHIAAEEYAAAAIQSEASGLSLPEIQNAQGLADVLSEILNALDPKSPEVVKQEVIVDLVDQCRSYQKRVMLLVNETVDEQLLCQGLALNDSLQQVLNQHENIVKATPVTGTRGVETSSLPPVNVKNEEDDESEDDFAQLAHRSSRDTNTQRRKQVNEKVEAVRINRILPPPPAPKKPVSSDAGMIDYLSGDVYKIEESHELSEPTSYVEPFHSSSNNPASTTRTLSSSPPCSPSTSSPSLSKQPVSDETSVINKSSEILTPTPQETQSPGFLPQPPSMFYPRQQFSEQQGVSHPSFGSSSSNDNLLVQTQNLSLNSSTPIKQEKPEEVLFKDLLDFAKSKTSSPSKPSSRPF* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0677 480 PANTHER TOM1-LIKE PROTEIN 4 5 476 - -
Pvu1g0677 480 MobiDBLite consensus disorder prediction 405 450 - -
Pvu1g0677 480 Pfam VHS domain 7 105 IPR002014 GO:0035091|GO:0043130
Pvu1g0677 480 ProSiteProfiles GAT domain profile. 144 232 IPR004152 GO:0035091|GO:0043130
Pvu1g0677 480 SUPERFAMILY ENTH/VHS domain 6 111 IPR008942 -
Pvu1g0677 480 MobiDBLite consensus disorder prediction 239 310 - -
Pvu1g0677 480 CDD GAT_GGA_like_plant 152 230 - -
Pvu1g0677 480 SUPERFAMILY GAT-like domain 114 232 - -
Pvu1g0677 480 MobiDBLite consensus disorder prediction 335 395 - -
Pvu1g0677 480 ProSiteProfiles VHS domain profile. 1 110 IPR002014 GO:0035091|GO:0043130
Pvu1g0677 480 PANTHER TOM1-LIKE PROTEIN 5 476 IPR044836 GO:0035091|GO:0043130|GO:0043328
Pvu1g0677 480 Gene3D - 3 120 IPR008942 -
Pvu1g0677 480 SMART VHS_2 1 106 IPR002014 GO:0035091|GO:0043130
Pvu1g0677 480 MobiDBLite consensus disorder prediction 327 453 - -
Pvu1g0677 480 Gene3D - 141 238 IPR038425 -
Pvu1g0677 480 MobiDBLite consensus disorder prediction 263 288 - -
Pvu1g0677 480 ProSiteProfiles CID domain profile. 1 136 IPR006569 -
Pvu1g0677 480 CDD VHS 7 104 - -
Pvu1g0677 480 Pfam GAT domain 159 232 IPR004152 GO:0035091|GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0677 Pvu-Chr1 8328312 8333914 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0677 - - gmx:100779405 612.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0677 1 8328312 8333914 Pvu1g0677 1 8328312 8333914 ECH
Pvu1g0677 1 8328312 8333914 Pvu9g1368 9 19489960 19496535 PCT