Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3078 ATGGCAAAAGTTTGTTGGCCGTACTTCGATCCTGAGTATGAGAACTTCAGCAGCAGAATCAACCCTCCAAGGGTCTCTATGGACAATGATAGTTGCCATGATTGTACACTGATCAAGATTGATAGTGTCAATAAACCTGGAATTCTGCTGGAAGTCGTGCAAATCTTGACAGATCTTGACTTCATAATTACCAAAGCTTACATATCTTCTGATGGTGGATGGTTTATGGATGTATTTCATGTTACGGATCAGCAAGGGAAGAAGATAACAGACAACAAAATTATTGACTTCATTGAAAAGGCTCTAGGACCAAAGGGCCGCCAGAACACAGAAAGTGTGAAGAATTGGGCAGGCAAACGGGTTGGCGTGCACTCCATTGGGGATCATACAGCCATTGAGCTCATTGGTAGGGACCGCCCAGGTCTCTTGTCTGAGATATCAGCTGTCCTTGCCAGCCTCCAATTCAATGTGATTGCAGCTGAAGTTTGGACTCATAACAGGCGAATAGCATGTGTCCTTTATGTGAATGATGCTACAAAAAAATCTATGGATGATGACTCAAAAAGATTGTCAATTATTGAGGAGCAGCTCAACCACATTCTACGTGGATGTGAGAATGATGAGAAAGTGGCTCGGACCAGTTTCTCCATGGGTTTCACCTTCACCCACATGGACAGGAGGCTCCACCAGATGTTGTTCGCTGATAGGGATTATGAGAGTGCTGGATTAACCACAACAAATGTTGATTGTCCTCCGTCTTTCAGGCCAAATATCAAGATAGAACGTATTGAGGAAAAAGGATACTCCGTTGTTAGTGTGAGATGCAAAGATCGGGCAAAATTGATGTTTGACATTGTCTGCACTCTCACTGACATGGAATATGTTGTTTTCCATGCGTCAATCTCATCCGAAGGCCCTTATGCATCACAGGAGTACTTCATCAGGCACGTGGATGGTTGCACACTTGACACTGAAGGGGAGAAAGAAAGGGTCACCAAATGCATTGAAGCTGCTATTCAAAGAAGAGTAAGCGAGGGTGTGAGCCTTGAGCTATGTGCAAAGGATAGAGTGGGCTTGCTGTCTGAAGTGACTAGGATTCTACGCGAGAATGGCTTGACAGTTTCTAGAGCAGGTGTGTCAACCATAGGAGAGAAAGGACTAAATGTTTTCTACGTGAGAGATGCATATGGAAACCCTGTCGACACGAACATCATTGAAGCATTGCGTAAAGAAATTGGTCAGAGTGTGATGGTCAATGTGAAGAAAGTACCAGCCAACACCAAAGCGCCAGAAACGTCCCGAGGATGGGCTAGAGTAAGCTTCTTCTTTGGGAACTTGTTGGAAAGGTTCTTAACTTAA 1359 0.4422 MAKVCWPYFDPEYENFSSRINPPRVSMDNDSCHDCTLIKIDSVNKPGILLEVVQILTDLDFIITKAYISSDGGWFMDVFHVTDQQGKKITDNKIIDFIEKALGPKGRQNTESVKNWAGKRVGVHSIGDHTAIELIGRDRPGLLSEISAVLASLQFNVIAAEVWTHNRRIACVLYVNDATKKSMDDDSKRLSIIEEQLNHILRGCENDEKVARTSFSMGFTFTHMDRRLHQMLFADRDYESAGLTTTNVDCPPSFRPNIKIERIEEKGYSVVSVRCKDRAKLMFDIVCTLTDMEYVVFHASISSEGPYASQEYFIRHVDGCTLDTEGEKERVTKCIEAAIQRRVSEGVSLELCAKDRVGLLSEVTRILRENGLTVSRAGVSTIGEKGLNVFYVRDAYGNPVDTNIIEALRKEIGQSVMVNVKKVPANTKAPETSRGWARVSFFFGNLLERFLT* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3078 452 ProSiteProfiles ACT domain profile. 131 215 IPR002912 -
Tpr1g3078 452 ProSiteProfiles ACT domain profile. 37 115 IPR002912 -
Tpr1g3078 452 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 4 452 IPR040217 -
Tpr1g3078 452 CDD ACT_ACR_3 268 342 - -
Tpr1g3078 452 CDD ACT_ACR_1 35 106 - -
Tpr1g3078 452 Gene3D - 125 202 - -
Tpr1g3078 452 SUPERFAMILY ACT-like 126 203 IPR045865 -
Tpr1g3078 452 SUPERFAMILY ACT-like 344 411 IPR045865 -
Tpr1g3078 452 Pfam ACT domain 131 168 IPR002912 -
Tpr1g3078 452 Pfam ACT domain 348 412 IPR002912 -
Tpr1g3078 452 Pfam ACT domain 37 85 IPR002912 -
Tpr1g3078 452 PANTHER FOUR ACT DOMAIN ACT DOMAIN PROTEIN WHICH PROTEIN 4 452 - -
Tpr1g3078 452 SUPERFAMILY ACT-like 32 104 IPR045865 -
Tpr1g3078 452 ProSiteProfiles ACT domain profile. 348 425 IPR002912 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3078 Tpr-Chr1 35281022 35289238 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3078 - - gmx:100797658 808.135
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3078 1 35281022 35289238 Tpr1g3078 1 35281022 35289238 ECH