Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04620 ATGATGATGATTAGAGAATGGAAGGATATTCCAGATGAACTTTTGATGCAGATTTTGTCACTTTTAGATGATCAAACAGTTATTACAGCTTCTCATGTTTGCCATGGCTGGAGAGATTCCATTTCTTTTGCTCTTACTCACTTATCACTCTCATGGTGTAGCAAGAACATGAATAACTTGGTCCTATCTTTAGCTCCTAAGTTCACAAAGTTGCATACTCTAATCCTTCGCCAAGACAAGCCTCAACTAGAGGACAATGCTGTTGAGGCTGTTTCAAAATTCTGTCCCGACCTGCAGGTTCTGGACCTCAGTAAAAGTTTCAAGCTTACGGATCGTTCACTATATGCTATAGCTCTTAGTGGTTGTGATCTTAGAAAACTCAACATCAGTGGCTGTTCAACCTTTAGTGACACAGCTTTGGCTTACCTAGCTAGTTTATGTAGAAAGTTGAAAGTTTTGAATCTATGTGGCTGTGTTAAAGCTGTATCAGATACTGCATTACAGGCAATTGGACATTACTGCAATGAGTTACAGTTTTTGAACCTTGGATGGTGTGAACAAATCAGTGATGTTGGAGTCATGAGTTTAGCATATGGATGCCCTGATCTTAGAACACTCGACTTATGTGGTTGTGTCCTTATAACAGATGATAGTGTAATAGCGTTGGCGAATAGGTGTCCTCATTTGAGGTCACTTGGGCTGTACTACTGCAAAAACATAACAGACAGAGCAATGTACTCATTGGCACAAAGTAAAGTGAATAACAAGATGTGGGGATCTGTGAATGGTGAATATGATGAGGATGGTTTAAGGTCTTTGAACATTAGTCAGTGTACATCACTCACTCCTTCAGCTGTTCAGGCTGTTTGTGACTCGTTCCCTGCACTTCACACCTGCTCAGGAAGACATTCACTCATTATTAGTGGTTGTTTGAATCTCACATCTGTGCATTGTGCTTGTTGCATCCGGCCTCACCGCGCTATAAACTCTTTCCCTCACTCTGCTCATTGA 1011 0.4095 MMMIREWKDIPDELLMQILSLLDDQTVITASHVCHGWRDSISFALTHLSLSWCSKNMNNLVLSLAPKFTKLHTLILRQDKPQLEDNAVEAVSKFCPDLQVLDLSKSFKLTDRSLYAIALSGCDLRKLNISGCSTFSDTALAYLASLCRKLKVLNLCGCVKAVSDTALQAIGHYCNELQFLNLGWCEQISDVGVMSLAYGCPDLRTLDLCGCVLITDDSVIALANRCPHLRSLGLYYCKNITDRAMYSLAQSKVNNKMWGSVNGEYDEDGLRSLNISQCTSLTPSAVQAVCDSFPALHTCSGRHSLIISGCLNLTSVHCACCIRPHRAINSFPHSAH 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04620 336 CDD F-box_AtSKP2-like 6 53 - -
Vivi4g04620 336 PANTHER UNCHARACTERIZED 11 300 - -
Vivi4g04620 336 FunFam F-box protein SKP2B 42 260 - -
Vivi4g04620 336 Pfam Leucine Rich repeat 226 249 IPR001611 GO:0005515
Vivi4g04620 336 Pfam Leucine Rich repeat 174 197 IPR001611 GO:0005515
Vivi4g04620 336 Pfam Leucine Rich repeat 200 223 IPR001611 GO:0005515
Vivi4g04620 336 Gene3D Ribonuclease Inhibitor 3 264 IPR032675 -
Vivi4g04620 336 ProSiteProfiles F-box domain profile. 4 55 IPR001810 GO:0005515
Vivi4g04620 336 SMART LRR_CC_2 147 173 IPR006553 -
Vivi4g04620 336 SMART LRR_CC_2 267 292 IPR006553 -
Vivi4g04620 336 SMART LRR_CC_2 226 251 IPR006553 -
Vivi4g04620 336 SMART LRR_CC_2 174 199 IPR006553 -
Vivi4g04620 336 SMART LRR_CC_2 121 146 IPR006553 -
Vivi4g04620 336 SMART LRR_CC_2 42 67 IPR006553 -
Vivi4g04620 336 SMART LRR_CC_2 68 94 IPR006553 -
Vivi4g04620 336 SMART LRR_CC_2 200 225 IPR006553 -
Vivi4g04620 336 SMART LRR_CC_2 95 120 IPR006553 -
Vivi4g04620 336 Pfam F-box-like 8 41 IPR001810 GO:0005515
Vivi4g04620 336 SUPERFAMILY F-box domain 7 46 IPR036047 GO:0005515
Vivi4g04620 336 SUPERFAMILY RNI-like 42 250 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04620 K03875 - gmx:100793275 571.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g04620 4 174180230 174181910 Vivi4g04620 4 174180230 174181910 ECH
Vivi4g04620 4 174180230 174181910 Vivi4g04620 4 174180230 174181910 PCT