Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02393 ATGGCTAACAATGCATCAGCCTGTGCTGAGAGGGCAACTAGTGACATGCTGATTGGACCAGACTGGGCAATTAACATAGAGTTGTGTGATATCATTAATATGGACCCTAGTCAATCTGCTGTTGACGAGGAACACTTTTCTGAAAACATAGTGTCAATATCTGACGAAGGACTTAAGCAAGCAAAGGATGCAATAAAGATACTTAAGAAGCGATTGAGCAGTAAAAATCACAAAATACAACTTCTGGCTCTTTTTGCTCTGGAAACCCTTAGTAAAAATTGTGGTGACAGTGTGTTTCAGATCATTGAGCGGGATATCTTACATGACATGGTTAAAATAGTGAAGAAGAAGCCTGACTTAAGAGTGAGGGAAAAGATATTGACTTTGATTGATACATGGCAAGAAGCTTTTGGTGGACCAAATGGAAGGTATCCCCAATACCATGCAGCATATAATGAATTAAAGTCTGCTGGTGTTGAATTTCCCCCACGAGAAGAGAATAGTGTTCCTTTCTTCACGCCTCCCCAAAGCCAGTCAGTTGCTCATATTGCTGCTGCAGAATATGACGCTGCTGCTATTCAGGCTTCTGTTCAGTCTGATGCATCTGGCCTTAGTTTGCCAGAGATTCAGAATGCTCAAGGACTAGCAGATGTATTGAGTGAAATGCTTAATGCCTTGGATCCTAAAAGTCCCGAGGTCGTGGATGAGCAACTTTTATGTCAGGGGTTGGCACTGAATGACAGTCTTCAGCGAGTGCTTAGTGAACATGACAATATTGTGAAAGCAACTTCTGTTACAGTCACAAGAGGAGTAGAAACACCAGTTCTGCCACCTATAAATGTAACGAATGAAGAGGAAGAAGAGTCAGACGATGATTTTGCCCAACTAGCCCATAGGTCATCACGTGGTATCAATGCACAGAGACGGAAACAAGTCAATAACAATGTACAACCAGTGAGAGTAAACCCAATTCTTCCCCCACCACCGCCACCAAAGAAACCAGTGTACTCTGATTCTGGTATGATTGATTTTCTCAGTGGTGATGTGTACAAAATAGAAGGATCCCATGAACTTTCTGAACCAACTTCAGATGTCGAGCCCCTTCATTCTAGTTCCAATAATCCTGCCTCAGCCACTAGAACACTGTCTTCCTCTCCGCCTTGTTCCTCAAGTATCTCATCACCAATTTTAAGCAAGCAGCCTGTGTTTGATGAAACATCTGTCATCAATAAATCCTCGGAAATCCTTACACCAACTCCTCGGGAAACACAATCTTCTGGCTCCCTTCCACAACCCCCTTCAATGTTTTATCCGAGACAACAGTTTTCTGAGCAACAAGGTGTGTCTCCTTTGAGTTTTGGTTCCAGTTCCTCAAATGACAACTTGTTGGAACAAACCCAGAATCTATCTATGTATTCGTCTACTCCAACCAAACAAGAGAAGTCAGAAGATGTCCTTTTTAAAGATCTACTGGACTTTGCAAAATCCAAAACCCCTTCTAAACCCAGTAGTAGGCCATTTTGA 1524 0.4232 MANNASACAERATSDMLIGPDWAINIELCDIINMDPSQSAVDEEHFSENIVSISDEGLKQAKDAIKILKKRLSSKNHKIQLLALFALETLSKNCGDSVFQIIERDILHDMVKIVKKKPDLRVREKILTLIDTWQEAFGGPNGRYPQYHAAYNELKSAGVEFPPREENSVPFFTPPQSQSVAHIAAAEYDAAAIQASVQSDASGLSLPEIQNAQGLADVLSEMLNALDPKSPEVVDEQLLCQGLALNDSLQRVLSEHDNIVKATSVTVTRGVETPVLPPINVTNEEEEESDDDFAQLAHRSSRGINAQRRKQVNNNVQPVRVNPILPPPPPPKKPVYSDSGMIDFLSGDVYKIEGSHELSEPTSDVEPLHSSSNNPASATRTLSSSPPCSSSISSPILSKQPVFDETSVINKSSEILTPTPRETQSSGSLPQPPSMFYPRQQFSEQQGVSPLSFGSSSSNDNLLEQTQNLSMYSSTPTKQEKSEDVLFKDLLDFAKSKTPSKPSSRPF 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02393 507 PIRSF TOM1 1 42 IPR014645 -
Vimu1g02393 507 PIRSF TOM1 50 239 IPR014645 -
Vimu1g02393 507 PIRSF TOM1 230 506 IPR014645 -
Vimu1g02393 507 CDD VHS 10 156 - -
Vimu1g02393 507 SUPERFAMILY ENTH/VHS domain 3 163 IPR008942 -
Vimu1g02393 507 SUPERFAMILY GAT-like domain 166 261 - -
Vimu1g02393 507 SMART VHS_2 5 158 IPR002014 GO:0035091|GO:0043130
Vimu1g02393 507 Pfam VHS domain 56 157 IPR002014 GO:0035091|GO:0043130
Vimu1g02393 507 ProSiteProfiles VHS domain profile. 12 162 IPR002014 GO:0035091|GO:0043130
Vimu1g02393 507 Gene3D - 3 162 IPR008942 -
Vimu1g02393 507 MobiDBLite consensus disorder prediction 412 480 - -
Vimu1g02393 507 MobiDBLite consensus disorder prediction 321 335 - -
Vimu1g02393 507 MobiDBLite consensus disorder prediction 356 396 - -
Vimu1g02393 507 MobiDBLite consensus disorder prediction 300 340 - -
Vimu1g02393 507 PANTHER TOM1-LIKE PROTEIN 235 503 IPR044836 GO:0035091|GO:0043130|GO:0043328
Vimu1g02393 507 MobiDBLite consensus disorder prediction 412 481 - -
Vimu1g02393 507 MobiDBLite consensus disorder prediction 300 320 - -
Vimu1g02393 507 MobiDBLite consensus disorder prediction 364 396 - -
Vimu1g02393 507 Coils Coil 58 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02393 Vimu-Chr1 34639396 34650372 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02393 - - gsj:114382475 606.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02393 1 34639396 34650372 Vimu1g02393 1 34639396 34650372 ECH
Vimu1g02393 1 34639396 34650372 Vimu10g02341 10 34197538 34204560 PCT