Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00986 ATGATCACTTTTTTTACTGTTCTTCTAGCTTCTGGTGGGGTCCACACCCTTGTCACTTCAAGCTACACGTGGCATCATACGCGTCGCTATCGTGAGCCGTACCGTTTCTTCTCTCTCTCTGTCACCCGTTTCTTCTTTATTTCTTCTACTTTCTTCACTTCAATAGCAGCTTTCAGAGAAGCGAAGCAGACCCTTTGTTCCTGTAATCAGCAACATCCTAAAGAACCAAGCTTTCTTCTACAAAGAGCTACGAGTCGCAAGGGCAAAGTTTATCTGGCTTTGGTGGAAATGGTTGGCAAGGAGGGTTTGAGAACTGGGGTGTTGAACTCAAGTTTTGGGAAGCTTATGATGGTTGGTGGTGGTGAAAATAGTGGGAAAGGAGTGAACTTGAAAGCTGGGGTGATCACAGATTGGAAGGACATTCCAGTGGAGCTTTTGATGCAAATTTTGTCACTTGTTGATGATCAAACGGTGATCATAGCTTCTGAAGTTTGTCGTGGGTGGAGAGAGGCAATTTGCTTTGGCCTTACCCGGTTGTCACTCTCATGGTGTAGCAAGAACATGAATAACTTGGTCCTATCTCTTGCTCCTAAATTTACAAAGTTGCAAACTTTAATCCTTCGTCAAGACAAACCTCAACTAGAGGACAATGCTGTCGAGACTATTGCAAATTTCTGTCATGACCTGCAAATCCTGGACCTCAGCAAAAGTTTCAAGCTCACAGATCGTTCATTGTATGCCATAGCCCTAGGTTGTTGGCATCTTACAAAACTGAACATTAGTGGTTGTTCAGCCTTTAGTGACAGTGCTCTGGCTTACCTAGCCAGTTTATGCAGAGAGCTGAAAGTTTTGAATCTATGTGGATGTGTTAAAGCTGCATCTGACACTGCATTACAGGCAATTGGACATTACTGCAATAAGTTACAGTCTTTGAACCTTGGATGGTGTGAAAATGTTAGTGATGTTGGAGTAACGAGTTTGGCGTATGGCTGCCCTGATCTTCGAACACTTGACTTGTGTGGTTGTGTCCTTATAACAGATGAGAGTGTAATTGCGTTGGCAAACAGTTGTCCTCATCTTCGGTCCCTGGGACTGTACTACTGCCAAAACATAACAGACAGAGCAATGTATTCATTGGCACAAAGCAAAGTGAAGAACAGAATGTGGGGTTCTGTGAAAGGTGGAAATGATGATGAGGATGGACTAAGGACTTTGAACATCAGCCAATGCACAGCACTCACTCCTTCTGCTGTGCAGGCTGTGTGTGATTCATCTCCTGCACTCCACACCTGTTCTGGAAGACACTCACTCATCATGAGTGGTTGTCTCAGTCTCACATCTGTGCACTGTGCTTGTGCTGTCCAAGCACACCGTGCTATCACCACCATTCCCAATACAGCACATTGA 1407 0.4449 MITFFTVLLASGGVHTLVTSSYTWHHTRRYREPYRFFSLSVTRFFFISSTFFTSIAAFREAKQTLCSCNQQHPKEPSFLLQRATSRKGKVYLALVEMVGKEGLRTGVLNSSFGKLMMVGGGENSGKGVNLKAGVITDWKDIPVELLMQILSLVDDQTVIIASEVCRGWREAICFGLTRLSLSWCSKNMNNLVLSLAPKFTKLQTLILRQDKPQLEDNAVETIANFCHDLQILDLSKSFKLTDRSLYAIALGCWHLTKLNISGCSAFSDSALAYLASLCRELKVLNLCGCVKAASDTALQAIGHYCNKLQSLNLGWCENVSDVGVTSLAYGCPDLRTLDLCGCVLITDESVIALANSCPHLRSLGLYYCQNITDRAMYSLAQSKVKNRMWGSVKGGNDDEDGLRTLNISQCTALTPSAVQAVCDSSPALHTCSGRHSLIMSGCLSLTSVHCACAVQAHRAITTIPNTAH 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00986 468 PANTHER UNCHARACTERIZED 153 432 - -
Viun8g00986 468 CDD F-box_AtSKP2-like 138 184 - -
Viun8g00986 468 Pfam Leucine Rich repeat 356 380 IPR001611 GO:0005515
Viun8g00986 468 Pfam Leucine Rich repeat 331 354 IPR001611 GO:0005515
Viun8g00986 468 Pfam Leucine Rich repeat 304 328 IPR001611 GO:0005515
Viun8g00986 468 SUPERFAMILY F-box domain 137 177 IPR036047 GO:0005515
Viun8g00986 468 FunFam F-box protein SKP2B 173 391 - -
Viun8g00986 468 SMART LRR_CC_2 252 277 IPR006553 -
Viun8g00986 468 SMART LRR_CC_2 357 382 IPR006553 -
Viun8g00986 468 SMART LRR_CC_2 305 330 IPR006553 -
Viun8g00986 468 SMART LRR_CC_2 399 424 IPR006553 -
Viun8g00986 468 SMART LRR_CC_2 331 356 IPR006553 -
Viun8g00986 468 SMART LRR_CC_2 173 198 IPR006553 -
Viun8g00986 468 SMART LRR_CC_2 278 304 IPR006553 -
Viun8g00986 468 SMART LRR_CC_2 226 251 IPR006553 -
Viun8g00986 468 SMART LRR_CC_2 199 225 IPR006553 -
Viun8g00986 468 Gene3D Ribonuclease Inhibitor 134 398 IPR032675 -
Viun8g00986 468 Pfam F-box-like 139 172 IPR001810 GO:0005515
Viun8g00986 468 SUPERFAMILY RNI-like 165 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00986 Viun-Chr8 11049402 11053745 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00986 K03875 - gmx:100793275 677.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00986 8 11049402 11053745 Viun8g00986 8 11049402 11053745 ECH
Viun8g00986 8 11049402 11053745 Viun9g02292 9 32337292 32340690 PCT