Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5783 ATGGCAAAAGTTTGCTGGCCATATTTTGATCCGGAGTATGAGAACTTCAGCTATAGAATCAACCCTCCAAGGGTCTCTGTGGACAATGATAGTTGCCATGATTGTACAGTTATCAAGATTGATAGTGTTAACAAACCTGGAATTCTTCTGGAAGTCGTACAAATCCTGACAGATCTCGACTTCATAATTACCAAAGCTTACGTATCTTCTGATGGTGTATGGTTTATGGATGTATTTCATGTCACGGATCAGCAAGGAAAAAAGGTAACAGACAGCAAAACTATTGATGTCATTGAAAAGGCTCTAGGACCAAAGGGAAAGAGCACAGAAGGTGTAAAAAGTTGGCCGGGCAAACGGGTTGCCGTGCACTCGGTTGGTGACCATACAGCCGTTGAGCTCATCGGTAGGGACCGCCCAGGTCTCTTGTCTGAGATATCCGCCGTCCTTGCCAGCCTTCAATTTAATGTGATTGCTGCTGAAGTTTGGACTCATAACAGGCGAATAGCTTGTGTCCTTTATGTCAATGATGCTACAAACCAAGCCATTGATGACCAGAAAAAGTTATCTATTATGGAGGAGCAGCTCAACCACATTCTACGCGTATCTGATGAGGAGGAGGATGAAAAAGAGGCCAAGAACAATTTCTACATGGGCTCCACCCATATGGATAGGAGACTCCATCAAATGTTGTTTGCTGATAGGGACTATGAAAGGGCTAGTGTAACAACAACAACACCGGATGTTGATTGTCCTCTCTCTTTCAGGCCGAAAATCGAAATTGAACGATGCGGGGAAAAAGGTTACTCAGCTGTTAGTGTGAAATGCAAAGATAGGGCCAAGTTGATGTTTGATATCGTTTGCACTCTCACTGACATGCAATATGTTGTTTTCCATGCTACAATCTCGTCTGAAGGGCCTTATGCATCCCAGGAGTACTTCATCCGGCACATGGATGGATGCACACTTGATACTGAAGGGGAGAAAGAAAGGGTCACCAAATGCATTGAAGCTGCTATTCAAAGAAGAGTAAGCGAGGGTGTGAGCCTTGAGCTGTGTGCAAAGGACAGAGTTGGCTTGTTGTCTGAAGTAACTAGGATTCTACGAGAGCATGGCTTGACAGTGTGTAGGGCTGGTGTGTCCACTGTTGGAGAAAAGGGACTCAATGTGTTCTACGTGAGAGATGCATATGGGAACCCTGTGGACATGAAGATCATCGAAGCTCTGCGTAAAGAAATTGGCCAGACTGTGATGGTGAATGTGAAGAGGGTACCAACCAATGCCAAAGCACCAGCTGAAACACGAGGATGGGCCAAAATAAGCTTCTTCTTTGGGAACTTGTTGGAAAGGTTCTTAACTTGA 1359 0.4474 MAKVCWPYFDPEYENFSYRINPPRVSVDNDSCHDCTVIKIDSVNKPGILLEVVQILTDLDFIITKAYVSSDGVWFMDVFHVTDQQGKKVTDSKTIDVIEKALGPKGKSTEGVKSWPGKRVAVHSVGDHTAVELIGRDRPGLLSEISAVLASLQFNVIAAEVWTHNRRIACVLYVNDATNQAIDDQKKLSIMEEQLNHILRVSDEEEDEKEAKNNFYMGSTHMDRRLHQMLFADRDYERASVTTTTPDVDCPLSFRPKIEIERCGEKGYSAVSVKCKDRAKLMFDIVCTLTDMQYVVFHATISSEGPYASQEYFIRHMDGCTLDTEGEKERVTKCIEAAIQRRVSEGVSLELCAKDRVGLLSEVTRILREHGLTVCRAGVSTVGEKGLNVFYVRDAYGNPVDMKIIEALRKEIGQTVMVNVKRVPTNAKAPAETRGWAKISFFFGNLLERFLT* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5783 452 Pfam ACT domain 36 85 IPR002912 -
Lja1g5783 452 Pfam ACT domain 130 174 IPR002912 -
Lja1g5783 452 Pfam ACT domain 348 411 IPR002912 -
Lja1g5783 452 ProSiteProfiles ACT domain profile. 348 425 IPR002912 -
Lja1g5783 452 Gene3D - 128 211 - -
Lja1g5783 452 CDD ACT_ACR_4 346 417 - -
Lja1g5783 452 ProSiteProfiles ACT domain profile. 37 114 IPR002912 -
Lja1g5783 452 SUPERFAMILY ACT-like 32 107 IPR045865 -
Lja1g5783 452 CDD ACT_ACR_3 268 342 - -
Lja1g5783 452 CDD ACT_ACR_1 35 106 - -
Lja1g5783 452 SUPERFAMILY ACT-like 125 201 IPR045865 -
Lja1g5783 452 SUPERFAMILY ACT-like 344 413 IPR045865 -
Lja1g5783 452 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 4 452 IPR040217 -
Lja1g5783 452 Gene3D - 343 425 - -
Lja1g5783 452 ProSiteProfiles ACT domain profile. 130 209 IPR002912 -
Lja1g5783 452 PANTHER FOUR ACT DOMAIN ACT DOMAIN PROTEIN WHICH PROTEIN 4 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5783 Lja-Chr1 102994421 103002800 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5783 - - gmx:100789044 786.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5783 1 102994421 103002800 Lja1g4953 1 68897112 68904452 PCT