Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02394 ATGGCAAAAGTTTGTTGGCCATATTTTGATCCGGAGTATGAGAACTTCAGCAACAGAATCAACCCTCCAAGGGAATTTCTAATACCTGGAAGAAGTGACTCTTTGATGGTAACTTTGTTTCCACTTCGCAGGGTCTCTGTGGACAATGATAGTTGCCATGCTTGTACACTAATCAAGTTTGATAGTATTAACAAACCTGGAATTCTGCTGGAAGTGGTGCAAATCCTGACAGACCTTGACTTCATAATTACCAAAGCTTACATATCTTCTGATGGTGGATGGTTTATGGATGTATTTCATGTCACCGATCAGCAAGGCAAGAAGATAACAGACAGCAAAACAATAGACTTCATTGAAAAGGCTCTAGGACCAAAGGGCCAGAGCACAGAAGGAGTGAAGAGTTGGCAAGGCAAAAGGGTTGGAGTTCACTCGATTGGTGATCATAAAGCCATTGAAATCATTGGAAGGGACCGCCCTGGTCTCTTGTCTGAGATATCAGCAGTCCTTGCCAGCCTCCAATTCAATGTGATTGCTGCTGAAGTTTGGACTCATAACATGAGAATAGCTTGTGTCCTTTATGTCAATGATGCTACAAACCAAGCCATGGATGAATCAAAAAGATTGTCTATTATGGAGGAGCAGCTCAACCACATCCTACGCGTCTGTGAGGATGACGAGAAAGTGGCTAGGACCAGTTTCTCAATGGGTTTGACCCACATGGATCGCAGGCTCCACCAAATGCTATTTGCTGACAGGGACTACGAAAGTGCTGGAGTAACAACAACAGATTGTCCTCCTTCTTTTAGGCCAAAAATCAGAATAGAACGTATTGTGGAAAAAGGGTACTCAGTAGTTACTGTAAGATGCAAAGATCGAGCAAAATTGATGTTTGACATTGTTTGCACTCTCACCGACATGCAGTATGTGGTTTTCCATGCTACAATCTCATCAGAAGGGCAATATGCATCACAGGAGTACTTTATCCGGCACATGGATGGATGCACGCTTGATACTGAAGGAGAGAAAGAAAGGGTCGTCAAATGCATTGAAGCTGCTATTCAAAGAAGAGTTAGCGAGGGTGTGAGCCTTGAACTGTGTGCAAAGGACAGAGTGGGATTGCTGTCAGAAGTGACAAGGATTCTACGAGAGAATGGCTTAACAGTTAGTAGGGCAGGTGTGTCAACCATTGGGGAGAAAGGGCTAAATGTGTTCTACGTAAGAGATTCATCTGGGAACCCAGTGGACATGAAGATCATCGAAGCATTACGCAAGGAAATTGGACAGACAGTGATGGTGAATGTGAAAAGGGTACCTGGCAGTGCCAAAGCACCAGCTGAAACCCGAGGTTGGGCCAAAACAAGCTTCTTCTTTGGGAACTTGTTCGAGAGAGAAGAGTTGGTTCTTCTCATGACCATTCAGTCTTGTACTGTTGGTCAGAGAAGAGTTGGTTCTTCTCATGACCGTTCGGTCTTGTACTGTTGGTCAGAGAAGAAAGAGTTGGTTCTTCTCATGACCGTTCGGTCTTGTGTTACTCCTGGTCATACATGGGTTGCCCCACTTGAGTCTTGCCAGTTGAAACCGTTCGATGCTCTCGGCCTTAGATACTCTTGGTCTCATATAGAGTTCTCGGCCTTAGATGCGCTTGGTCTCATTATTGCTTTCGGTCTGGTGGGCCTCGGTCAGAGAAGATTAGTCCTTTTCATGACCGTTTCGTCTTGTAAAGGGTGTTCGGTCCTGACACTCAGTTCACTCCCAGTGAGAGGATCGACGCGTGTAGTGGGAGTAGTGGGAGGTGCTAAGGTAGACGCTATCACTGGAGGTCTATACTGCGCAATAGGTGATGATGTACCATTGGAGCAAGCTTTGGAGGTTGAAGAAGATCCAGTCCCTAGTACTTAG 1899 0.4529 MAKVCWPYFDPEYENFSNRINPPREFLIPGRSDSLMVTLFPLRRVSVDNDSCHACTLIKFDSINKPGILLEVVQILTDLDFIITKAYISSDGGWFMDVFHVTDQQGKKITDSKTIDFIEKALGPKGQSTEGVKSWQGKRVGVHSIGDHKAIEIIGRDRPGLLSEISAVLASLQFNVIAAEVWTHNMRIACVLYVNDATNQAMDESKRLSIMEEQLNHILRVCEDDEKVARTSFSMGLTHMDRRLHQMLFADRDYESAGVTTTDCPPSFRPKIRIERIVEKGYSVVTVRCKDRAKLMFDIVCTLTDMQYVVFHATISSEGQYASQEYFIRHMDGCTLDTEGEKERVVKCIEAAIQRRVSEGVSLELCAKDRVGLLSEVTRILRENGLTVSRAGVSTIGEKGLNVFYVRDSSGNPVDMKIIEALRKEIGQTVMVNVKRVPGSAKAPAETRGWAKTSFFFGNLFEREELVLLMTIQSCTVGQRRVGSSHDRSVLYCWSEKKELVLLMTVRSCVTPGHTWVAPLESCQLKPFDALGLRYSWSHIEFSALDALGLIIAFGLVGLGQRRLVLFMTVSSCKGCSVLTLSSLPVRGSTRVVGVVGGAKVDAITGGLYCAIGDDVPLEQALEVEEDPVPST 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02394 632 Coils Coil 194 214 - -
Vimu1g02394 632 SUPERFAMILY ACT-like 358 427 IPR045865 -
Vimu1g02394 632 SUPERFAMILY ACT-like 52 126 IPR045865 -
Vimu1g02394 632 Gene3D - 148 232 - -
Vimu1g02394 632 ProSiteProfiles ACT domain profile. 57 136 IPR002912 -
Vimu1g02394 632 ProSiteProfiles ACT domain profile. 150 233 IPR002912 -
Vimu1g02394 632 Pfam ACT domain 151 184 IPR002912 -
Vimu1g02394 632 Pfam ACT domain 362 422 IPR002912 -
Vimu1g02394 632 Pfam ACT domain 57 105 IPR002912 -
Vimu1g02394 632 SUPERFAMILY ACT-like 146 223 IPR045865 -
Vimu1g02394 632 CDD ACT_ACR_1 55 126 - -
Vimu1g02394 632 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 10 435 IPR040217 -
Vimu1g02394 632 CDD ACT_ACR_4 360 431 - -
Vimu1g02394 632 ProSiteProfiles ACT domain profile. 362 439 IPR002912 -
Vimu1g02394 632 CDD ACT_ACR_3 282 356 - -
Vimu1g02394 632 Gene3D - 357 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02394 Vimu-Chr1 34651945 34660261 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02394 - - gmx:100789044 831.247
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02394 1 34651945 34660261 Vimu1g02394 1 34651945 34660261 ECH
Vimu1g02394 1 34651945 34660261 Vimu10g01955 10 28401578 28405995 PCT