Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere05g2563 | ATGATGGGAAAGGAGAACTTCAGGACTGAGGACTTGAACTTGTGCTTTGAGAAACTCATGATGATTGCTGGCGGTGGGGTTGTCGACAATGGTGGTAAAGGATTGAAAATGGAGGGTGGGGTGAATTCAGATTCAAAGTGGAAAGACATTCCGGTGGAACTTCTGATGCAAATTTTGGGGCTTGTGGATGATCAAACGGTGATCTCAGCTTCTGGTGTCTGCCGTGGGTGGAGAGATGCTATTTGCTTTGGCCTTACCCGTTTATCACTATCATGGTGCTGCAAGAACATGAATAACTTGGTCCTATCTCTTGCTTCTAAATTCACAAAATTGCAGACTCTAATCCTTCGTCAAGCGAAGCCTCAGCTAGAGGATAATGCTGTTGAGACTATAGCAAATTGCTGTCATGACCTGCAGATCCTGGACCTGAGCAAAAGTTTCAAGCTGACTGATCGTTCACTGTATGCCTTAGCCCATGGTTGTCCTGATCTTACAAAATTAAACATCAGTGGGTGCTCAGCATTTAGCGACGCTGCTGTGGCTTACCTGGCCAGTTTCTGCAGAAAATTGAAAATTTTGAATCTCTGTGGGTGTGTGAAAGCTGCATCTGACACTGCTTTGCAGGCAATCGGACGTTACTGCAATCAATTGCAGTCTCTGAACCTCGGATGGTGTGAAAATGTTGGTGATGTTGGAGTGATGAGTTTAGCACATGGGTGCCCTGATCTTAGAACACTAGACTTGTGTGGTTGTGTCTTTATAACAGATGATAGTGTGATAGCATTGGCAAACAGATGCCCTCATCTGAGGTCTCTGGGGCTATACTACTGTCAAAACATCACAGACAGGGCAATGCATTCTTTGGCCCAAAGCAAAGTGAATCACAGGATGTGGGGATCCGTGAAAGGAGGAAACGAGGAGGATGGGCTAAGGACTCTGAACATAAGCCAATGCACAGCACTCACACCCTCTGCGGTTCAGGCAGTGTGTGACTCATTCCCAGCCCTTCACACATGCTCGGGCAGGCATTCACTCATCATGAGTGGCTGCCTCAACTTGACGTCTGTGCATTGTGCTTGTGCTGTCCAGGCACATCGTGCAATCACTACTCTTCCTCATCCAGCTCACTGA | 1131 | 0.4695 | MMGKENFRTEDLNLCFEKLMMIAGGGVVDNGGKGLKMEGGVNSDSKWKDIPVELLMQILGLVDDQTVISASGVCRGWRDAICFGLTRLSLSWCCKNMNNLVLSLASKFTKLQTLILRQAKPQLEDNAVETIANCCHDLQILDLSKSFKLTDRSLYALAHGCPDLTKLNISGCSAFSDAAVAYLASFCRKLKILNLCGCVKAASDTALQAIGRYCNQLQSLNLGWCENVGDVGVMSLAHGCPDLRTLDLCGCVFITDDSVIALANRCPHLRSLGLYYCQNITDRAMHSLAQSKVNHRMWGSVKGGNEEDGLRTLNISQCTALTPSAVQAVCDSFPALHTCSGRHSLIMSGCLNLTSVHCACAVQAHRAITTLPHPAH | 376 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere05g2563 | 376 | CDD | F-box_AtSKP2-like | 46 | 93 | - | - | |
| Dere05g2563 | 376 | Gene3D | Ribonuclease Inhibitor | 82 | 300 | IPR032675 | - | |
| Dere05g2563 | 376 | PANTHER | UNCHARACTERIZED | 236 | 355 | - | - | |
| Dere05g2563 | 376 | Gene3D | - | 46 | 81 | - | - | |
| Dere05g2563 | 376 | SMART | LRR_CC_2 | 214 | 239 | IPR006553 | - | |
| Dere05g2563 | 376 | SMART | LRR_CC_2 | 135 | 160 | IPR006553 | - | |
| Dere05g2563 | 376 | SMART | LRR_CC_2 | 266 | 291 | IPR006553 | - | |
| Dere05g2563 | 376 | SMART | LRR_CC_2 | 187 | 213 | IPR006553 | - | |
| Dere05g2563 | 376 | SMART | LRR_CC_2 | 307 | 332 | IPR006553 | - | |
| Dere05g2563 | 376 | SMART | LRR_CC_2 | 108 | 134 | IPR006553 | - | |
| Dere05g2563 | 376 | SMART | LRR_CC_2 | 161 | 186 | IPR006553 | - | |
| Dere05g2563 | 376 | SMART | LRR_CC_2 | 240 | 265 | IPR006553 | - | |
| Dere05g2563 | 376 | SMART | LRR_CC_2 | 82 | 107 | IPR006553 | - | |
| Dere05g2563 | 376 | Pfam | Leucine Rich repeat | 214 | 237 | IPR001611 | GO:0005515 | |
| Dere05g2563 | 376 | Pfam | Leucine Rich repeat | 240 | 263 | IPR001611 | GO:0005515 | |
| Dere05g2563 | 376 | Pfam | F-box-like | 48 | 81 | IPR001810 | GO:0005515 | |
| Dere05g2563 | 376 | SUPERFAMILY | RNI-like | 82 | 290 | - | - | |
| Dere05g2563 | 376 | FunFam | F-box protein SKP2B | 82 | 300 | - | - | |
| Dere05g2563 | 376 | SUPERFAMILY | F-box domain | 47 | 87 | IPR036047 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere05g2563 | Dere-ChrDere05 | 36185643 | 36187832 | Wgd |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Dere05g2563 | 05 | 36185643 | 36187832 | Dere04g1138 | 04 | 12735246 | 12737703 | CCT | |
| Dere05g2563 | 05 | 36185643 | 36187832 | Dere05g2563 | 05 | 36185643 | 36187832 | ECH |