Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1536 ATGGTGAATTCTATGGTGGAACGCGCCACGAGCGACATGCTCATCGGCCCCGATTGGGCCAGGAACATCGAGATCTGCGATATGCTCAATCGTGACCCTGGACAAGCAAAGGATGTGGTTAAAGGCATAAAGAAGCGGATTGGAAGTAAAAACTCAAAAGTCCAGCTTCTTGCTCTAACTTTGCTGGAGACAATCGTAAAGAACTGTGGAGACATTGTGCACATGCATGTTGCAGAGAGAGATGTGCTTCATGAGATGGTGAAAATAGTAAAGAAGAAGCCTGATTTTCATGTCAGAGAGAAGATACTGATTCTTATAGATACTTGGCAAGAAGCTTTTGGAGGGCCAAGGGCAAGATATCCACAATATTATGCTGCATACCAGGAACTGCTGCGTGCCGGTGCTGTATTCCCTCACAGATCTGGGCAGTCTGCACCTGTATTCACACCTCCACAGACTCAACCATTGGCATCATACCCTCAGAATGTACGTGATTCTGATGTTCGGCAGGACACAGCTGAGTCCTCTGCGGAGTCTGAGTTTCCAGCACTAAGTTTGACTGAAATTCAGAATGCACGAGGTATTATGGATGTTCTTTCAGAAATGCTAAACGCATTAGACCCTGGTAACAAAGAAGGTCTAAGGCAGGAGGTTATTGTGGATTTGGTGGAGCAGTGTCGAACATACAAGCAGAGAGTGGTACACCTTGTGAACTCAACTGCGGATGAATCACTGCTTTGCCAAGGACTATCTCTGAATGATGATCTACAGCGTGTACTGGCCAAGCATGAATCTCTTTTGTCAGGAACTTCTAATCAAAATAAAAATCAGCCAGAGAATTCGAAGCCAGCACCAGCGGGAGCACTTGTAGATATTGATGCTCCTTTGGTTGATACTGTGGATACTAGCAAGCAGACTGATGGGAGATCCCCTACTAGCTCTGCATCAGGGTCCCAAACATTGAATCAGTTATTGCTTCCTGCACCTCCCACATCTAACAGTTCAGCTATGCCTGCCAAGGTTGATCCAAAATTGGACCTGCTCAGTGGTGATGACTATAACTCACCAAAAGCAGATACTTCACTTGCTCTTGTTCCTCTTGGAGAACAACAGCCGGCTATTCCTGTGAATCACCAGAATGCCATTGTTCCTTTTGATATTTTTGCTAGTGGAAACAGTGCACCTACATCTGTCAATACTCAACTAAGCCAGCCAACTAATGTTTCTGGTCAAACTAGTCCATTTGCTCCTCAATTTCAACAACAGCAGACTTTCATATCTTCTCAAGGTGGAATTTACCCCAACGGAAATGTGCCAAATGCTGGGCCACCTCAGTATGAGCAATCACTCTACACTCAAAGTACTGGTCCTGCCTGGAATGGTCAGGTTGCACAGCAGCAACAGCCACCTTCGCCTGTTTATGGTACACAAAACAATGGATCATTGCCACCACCTCCGTGGGAAGCTCAACCGACAGATAATGGCAGTCCAGTCATAGGTGCTCAATATACACAGCCACCACAAGTCACTCAGGTTGGAATGACACATATACAGGGTGCTGCAGATTCTCAGGGGCCTCCAGCAATGGGCAATGGCCACTTTGGTATGTATATGCAGCCAAATGGGAACAGTCATTTGTCAGCAATTAATAACAATGTTGGTCAGAACTATCACTTGGGCTTGCACACACAGCATATCCAACGTGTGGCTGGGCCCTACATGGGTATGGTGCCACATCAAATGCAAGCTGGTCCTGTGGCTTCCATGTACCCTCAACAATTATACGCGAATCAATTTATGGCATATGGCTATGGTCAGCAACAAGGAGTTCCATATGTTGAGCAGCAAATGTATGGTCTATCTATTAGAGATGACAATGGTTTGAGAAACTCTAACCAGGTTCCTACTTCATCTTATGTTCAATCTGGGAAGCCTTCCAAGCCAGAGGATAAGTTATTTGGGGACCTTGTTGACATGGCAAAGGTGAAGCCGAAACCCACTCCAGGCAGAGCTGGTAGCATGTAA 2025 0.4588 MVNSMVERATSDMLIGPDWARNIEICDMLNRDPGQAKDVVKGIKKRIGSKNSKVQLLALTLLETIVKNCGDIVHMHVAERDVLHEMVKIVKKKPDFHVREKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAVFPHRSGQSAPVFTPPQTQPLASYPQNVRDSDVRQDTAESSAESEFPALSLTEIQNARGIMDVLSEMLNALDPGNKEGLRQEVIVDLVEQCRTYKQRVVHLVNSTADESLLCQGLSLNDDLQRVLAKHESLLSGTSNQNKNQPENSKPAPAGALVDIDAPLVDTVDTSKQTDGRSPTSSASGSQTLNQLLLPAPPTSNSSAMPAKVDPKLDLLSGDDYNSPKADTSLALVPLGEQQPAIPVNHQNAIVPFDIFASGNSAPTSVNTQLSQPTNVSGQTSPFAPQFQQQQTFISSQGGIYPNGNVPNAGPPQYEQSLYTQSTGPAWNGQVAQQQQPPSPVYGTQNNGSLPPPPWEAQPTDNGSPVIGAQYTQPPQVTQVGMTHIQGAADSQGPPAMGNGHFGMYMQPNGNSHLSAINNNVGQNYHLGLHTQHIQRVAGPYMGMVPHQMQAGPVASMYPQQLYANQFMAYGYGQQQGVPYVEQQMYGLSIRDDNGLRNSNQVPTSSYVQSGKPSKPEDKLFGDLVDMAKVKPKPTPGRAGSM* 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1536 674 PANTHER TOM1-LIKE PROTEIN 1 668 IPR044836 GO:0035091|GO:0043130|GO:0043328
Dod08g1536 674 ProSiteProfiles VHS domain profile. 9 138 IPR002014 GO:0035091|GO:0043130
Dod08g1536 674 SUPERFAMILY GAT-like domain 143 269 - -
Dod08g1536 674 CDD VHS 2 132 - -
Dod08g1536 674 CDD GAT_GGA_like_plant 188 266 - -
Dod08g1536 674 Gene3D - 1 138 IPR008942 -
Dod08g1536 674 MobiDBLite consensus disorder prediction 301 341 - -
Dod08g1536 674 MobiDBLite consensus disorder prediction 267 281 - -
Dod08g1536 674 MobiDBLite consensus disorder prediction 625 644 - -
Dod08g1536 674 MobiDBLite consensus disorder prediction 624 674 - -
Dod08g1536 674 MobiDBLite consensus disorder prediction 142 180 - -
Dod08g1536 674 Gene3D - 182 276 IPR038425 -
Dod08g1536 674 Pfam GAT domain 194 269 IPR004152 GO:0035091|GO:0043130
Dod08g1536 674 SMART VHS_2 2 134 IPR002014 GO:0035091|GO:0043130
Dod08g1536 674 MobiDBLite consensus disorder prediction 301 338 - -
Dod08g1536 674 ProSiteProfiles GAT domain profile. 180 268 IPR004152 GO:0035091|GO:0043130
Dod08g1536 674 SUPERFAMILY ENTH/VHS domain 3 138 IPR008942 -
Dod08g1536 674 MobiDBLite consensus disorder prediction 455 483 - -
Dod08g1536 674 MobiDBLite consensus disorder prediction 145 166 - -
Dod08g1536 674 MobiDBLite consensus disorder prediction 267 287 - -
Dod08g1536 674 MobiDBLite consensus disorder prediction 455 493 - -
Dod08g1536 674 Pfam VHS domain 3 129 IPR002014 GO:0035091|GO:0043130
Dod08g1536 674 PANTHER TARGET OF MYB PROTEIN 1 1 668 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1536 Dod-Chr8 34776831 34787224 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1536 - - gmx:100809022 1038.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1536 08 34776831 34787224 Dod08g1536 08 34776831 34787224 ECH
Dod08g1536 08 34776831 34787224 Dod09g1473 09 36322326 36330404 PCT