Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5782 ATGATTGGCAAATGGAGCATGAGGAGTGAGGAGTTGAACTTGTGCTTTAAGAAGCTTATGATGGTTGGAAATAGTGAGAAAAAAGTGATTATGAATAGTGGGGCGATGACGGAATGGAAGGATATTCCTTTGGAACTTTTGATGCAGATTTTGTCACTTGTGGATGATCAGACAAGAGATGCAATTGGCTTTGGTCTTACCCGTTTATCACTCTCTTGGTGTAGCAAGAACATGAATAACTTGGTTCTATCTCTTGCTCCTAAGTTAACAAAGCTGCAAACTCTAATCCTTCGCCAAGACAAGCCTCAACTAGAGGACAATGCTATTGAGACTATTGCAAATTTCTGTCACGACCTGCAGATCCTCGACCTTAGCAAAAGTTTCAAGCTTACTGATCGATCACTGTATGCCATAGCTATTGGTTGTGGAGATCTAACAAAGCTGAACATCAGTGGGTGTTCATCCTTCAGCGACAATGCTCTGGCCTACCTTTTGCAATCCTTGAACCTTGGATGGTGTGAAAGTGTTAGTGATGTTGGAGTACTTTTAGCATATGGGTGCCCAGATCATAGAACAGTTGACTTATGTGGATGTGTCCTTATAACAGATGATAGTGTGATTGCCTTGGCAAACAACTGTTCTCATCTGAGGTCCCTTGGGCTGTACTATTGCAAAAACATCACAGACAAACCTATGTACTCCTTGGCACATAGTAAAGTGAACAATAATATGAAATGTGAAAACGATGAGGATGGTTTAAGGACCTTGAACATTAGCCAGTGTATCGCACTCACACTTTCTGTTGGTCAAGCTGTGTGCGATTCCTACCCTACACTTCACACCTGTTCTGGAAGACATTCACTCATCATGAGTGGTTGTCTCAATCTGACATTTGTGCATTGTGCGTGTGTTGTCCACGCGCACCGTGCTATCACCAGTTTCCCTCATCCAACTCACTGA 960 0.426 MIGKWSMRSEELNLCFKKLMMVGNSEKKVIMNSGAMTEWKDIPLELLMQILSLVDDQTRDAIGFGLTRLSLSWCSKNMNNLVLSLAPKLTKLQTLILRQDKPQLEDNAIETIANFCHDLQILDLSKSFKLTDRSLYAIAIGCGDLTKLNISGCSSFSDNALAYLLQSLNLGWCESVSDVGVLLAYGCPDHRTVDLCGCVLITDDSVIALANNCSHLRSLGLYYCKNITDKPMYSLAHSKVNNNMKCENDEDGLRTLNISQCIALTLSVGQAVCDSYPTLHTCSGRHSLIMSGCLNLTFVHCACVVHAHRAITSFPHPTH* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5782 319 PANTHER F-BOX SKP2A-LIKE PROTEIN 165 301 - -
Lja1g5782 319 PANTHER F-BOX SKP2A-LIKE PROTEIN 1 164 - -
Lja1g5782 319 Pfam Leucine Rich repeat 165 181 IPR001611 GO:0005515
Lja1g5782 319 Gene3D Ribonuclease Inhibitor 40 313 IPR032675 -
Lja1g5782 319 SMART LRR_CC_2 213 238 IPR006553 -
Lja1g5782 319 SMART LRR_CC_2 187 212 IPR006553 -
Lja1g5782 319 SMART LRR_CC_2 116 141 IPR006553 -
Lja1g5782 319 SMART LRR_CC_2 89 115 IPR006553 -
Lja1g5782 319 SMART LRR_CC_2 63 88 IPR006553 -
Lja1g5782 319 SMART LRR_CC_2 142 167 IPR006553 -
Lja1g5782 319 SUPERFAMILY RNI-like 63 299 - -
Lja1g5782 319 PANTHER UNCHARACTERIZED 165 301 - -
Lja1g5782 319 PANTHER UNCHARACTERIZED 1 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5782 Lja-Chr1 102968946 102976609 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5782 K03875 - gmx:100797840 498.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5782 1 102968946 102976609 Lja1g4952 1 68848082 68852599 PCT