Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu1g0681 . . . Aed6g0958 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g0682 . . . . Aev07g1000 . . . . . . Apr9g0754 . . . . . Cca05g00076 . . . . . Gma14g01475 Gso14g1246 Gso13g0200 . . . . . . . . . . . . Lja1g5795 . . . . Mtr1g0820 . . . . . . . . . . . . . . . . . . . Vra6g1418
Pvu1g0683 . . . . Aev07g0999 . Ahy6g2405 . . . . Apr9g0760 . . . . . Cca05g00077 . . . . . Gma14g01474 Gso14g1245 Gso13g0198 . . . . . . . . . . . . Lja1g5797 . . . . Mtr1g0819 . . . . . . . . . . Sto5g0344 . . Tsu01g00926 . . . . . Vra6g1417
Pvu1g0684 . . . . Aev07g0996 . Ahy6g2406 . . . . Apr9g0763 . . . . . Cca05g00078 . . . . . Gma14g01466 Gso14g1244 . . . . . . . . . . . . . Lja1g5799 . . . . Mtr1g0818 . . . . . . . . . . Sto5g0345 . . Tsu01g00927 . Vifa3g04482 . . . Vra6g1415
Pvu1g0685 . . . . Aev07g0985 . Ahy6g2408 . . . . . . . . . . . . . . . . Gma14g01464 Gso14g1241 . . . . . . . . . . . . . Lja1g5800 . . . . Mtr1g0817 . . . . Pste8g02009 . . . Spst8g01419 . . . . Tsu01g00928 . . Vimu1g02382 . . .
Pvu1g0686 Acco05g2764 Accr3g00271 . . Aev07g1719 . . . Alju07g2721 . . Apr9g0770 . . Bisa05g0891 . Car04g02921 Cca05g00904 Dere05g2549 . Enph7g1328 Glsi10g1229 . Gma14g01450 . Gso13g0195 . . . . . . . Lasa6g00897 . . Lele27g1857 Lele28g0252 Lja1g5803 . . . Mibi08g2425 . . Phco2g00763 Prci2g0372 . Pste8g01997 Pumo9g01123 Rops9g02491 Seca8g02510 Spst8g01794 . Sto5g0351 . . . Vian7g00285 Vifa3g04060 Vimu1g02381 Viun8g01007 . Vra6g1414
Pvu1g0687 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g0688 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g0689 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g0690 . . . . Aev07g1716 . . . . . . . . . Bisa05g0892 . . Cca05g00905 Dere05g2548 Dod08g1421 . Glsi10g1228 . Gma14g01449 . Gso13g0194 . . . . . . . Lasa5g02855 . . . . . . . . . . . Phco2g00766 . . Pste8g01996 Pumo9g01124 Rops9g02492 Seca4g02394 Spst8g01413 . Sto5g0352 . . . Vian7g00284 . Vimu1g02380 Viun8g01008 . Vra6g1413
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu1g0681 Chr1 8394619 8395025 +
Aed Aed6g0958 Chr6 12454505 12456035 -
Pvu Pvu1g0682 Chr1 8490434 8494585 +
Aev Aev07g1000 Chr07 7384755 7391806 +
Apr Apr9g0754 Chr9 13476684 13480211 -
Cca Cca05g00076 Chr05 1645570 1649431 -
Gma Gma14g01475 Chr14 31733270 31736374 -
Gso Gso14g1246 Chr14 30297952 30303279 -
Gso Gso13g0200 Chr13 11120061 11136299 +
Lja Lja1g5795 Chr1 103521263 103522730 -
Mtr Mtr1g0820 Chr1 9292213 9295256 -
Vra Vra6g1418 Chr6 27942567 27945840 -
Pvu Pvu1g0683 Chr1 8501147 8504760 +
Aev Aev07g0999 Chr07 7375748 7379777 +
Ahy Ahy6g2405 Chr6 108424635 108427676 +
Apr Apr9g0760 Chr9 13657526 13660725 -
Cca Cca05g00077 Chr05 1676357 1683260 -
Gma Gma14g01474 Chr14 31713540 31726912 +
Gso Gso14g1245 Chr14 30278969 30291786 +
Gso Gso13g0198 Chr13 11059025 11063459 -
Lja Lja1g5797 Chr1 103526494 103530369 -
Mtr Mtr1g0819 Chr1 9278487 9282748 -
Sto Sto5g0344 Chr5 2068363 2070970 -
Tsu Tsu01g00926 Chr01 8472719 8477950 -
Vra Vra6g1417 Chr6 27925141 27931254 -
Pvu Pvu1g0684 Chr1 8512728 8515841 +
Aev Aev07g0996 Chr07 7358727 7363073 +
Ahy Ahy6g2406 Chr6 108434255 108437345 +
Apr Apr9g0763 Chr9 13814640 13816030 -
Cca Cca05g00078 Chr05 1713390 1717189 +
Gma Gma14g01466 Chr14 31620478 31624117 +
Gso Gso14g1244 Chr14 30258849 30264673 +
Lja Lja1g5799 Chr1 103546703 103548811 -
Mtr Mtr1g0818 Chr1 9245820 9259854 -
Sto Sto5g0345 Chr5 2073031 2075506 -
Tsu Tsu01g00927 Chr01 8487171 8514538 -
Vifa Vifa3g04482 Chr3 1281894525 1281897631 +
Vra Vra6g1415 Chr6 27865334 27871218 -
Pvu Pvu1g0685 Chr1 8548562 8550125 +
Aev Aev07g0985 Chr07 7236319 7244154 -
Ahy Ahy6g2408 Chr6 108445477 108448176 -
Gma Gma14g01464 Chr14 31554668 31558252 -
Gso Gso14g1241 Chr14 30189578 30193243 +
Lja Lja1g5800 Chr1 103549938 103558717 -
Mtr Mtr1g0817 Chr1 9239848 9243270 -
Pste Pste8g02009 Chr8 16054149 16058922 +
Spst Spst8g01419 Chr8 13367332 13371119 +
Tsu Tsu01g00928 Chr01 8515602 8518800 -
Vimu Vimu1g02382 Chr1 34453597 34457197 -
Pvu Pvu1g0686 Chr1 8555553 8560503 +
Acco Acco05g2764 Chr05 42868067 42870724 -
Accr Accr3g00271 Chr3 2944398 2946853 +
Aev Aev07g1719 Chr07 18077017 18090391 -
Alju Alju07g2721 Chr07 52706139 52708648 -
Apr Apr9g0770 Chr9 14096097 14100275 +
Bisa Bisa05g0891 Chr05 15362931 15366002 +
Car Car04g02921 Chr04 56344683 56347503 -
Cca Cca05g00904 Chr05 24337311 24341446 +
Dere Dere05g2549 Chr05 36008924 36012832 -
Enph Enph7g1328 Chr7 18757355 18761825 -
Glsi Glsi10g1229 Chr10 8287531 8291752 -
Gma Gma14g01450 Chr14 31010165 31015059 -
Gso Gso13g0195 Chr13 10939393 10947801 -
Lasa Lasa6g00897 Chr6 35768106 35769597 +
Lele Lele27g1857 Chr27 23380674 23385194 -
Lele Lele28g0252 Chr28 1456106 1457996 +
Lja Lja1g5803 Chr1 103842660 103846376 +
Mibi Mibi08g2425 Chr08 42008756 42013300 -
Phco Phco2g00763 Chr2 8263398 8268153 +
Prci Prci2g0372 Chr2 2610425 2613709 +
Pste Pste8g01997 Chr8 15864397 15869244 -
Pumo Pumo9g01123 Chr9 33166790 33171549 +
Rops Rops9g02491 Chr9 46605017 46609497 +
Seca Seca8g02510 Chr8 55392482 55395482 -
Spst Spst8g01794 Chr8 21626380 21631900 -
Sto Sto5g0351 Chr5 2118878 2123050 +
Vian Vian7g00285 Chr7 8338727 8343550 -
Vifa Vifa3g04060 Chr3 1196601642 1196608716 -
Vimu Vimu1g02381 Chr1 34443601 34448122 -
Viun Viun8g01007 Chr8 11493383 11498433 +
Vra Vra6g1414 Chr6 27852924 27857940 -
Pvu Pvu1g0687 Chr1 8564152 8565089 +
Pvu Pvu1g0688 Chr1 8578391 8579632 +
Pvu Pvu1g0689 Chr1 8578557 8578670 +
Pvu Pvu1g0690 Chr1 8595350 8600839 -
Aev Aev07g1716 Chr07 18041078 18046470 -
Bisa Bisa05g0892 Chr05 15368417 15372840 -
Cca Cca05g00905 Chr05 24343946 24381122 -
Dere Dere05g2548 Chr05 35996621 35999532 +
Dod Dod08g1421 Chr08 25305419 25323664 +
Glsi Glsi10g1228 Chr10 8278904 8286597 +
Gma Gma14g01449 Chr14 30986475 31006836 +
Gso Gso13g0194 Chr13 10919184 10936754 +
Lasa Lasa5g02855 Chr5 513474803 513482515 +
Phco Phco2g00766 Chr2 8354056 8359463 -
Pste Pste8g01996 Chr8 15849288 15862458 +
Pumo Pumo9g01124 Chr9 33172736 33188204 -
Rops Rops9g02492 Chr9 46612908 46626877 -
Seca Seca4g02394 Chr4 40746155 40754884 +
Spst Spst8g01413 Chr8 13299589 13323620 +
Sto Sto5g0352 Chr5 2123978 2127693 -
Vian Vian7g00284 Chr7 8316021 8336432 +
Vimu Vimu1g02380 Chr1 34428115 34441629 +
Viun Viun8g01008 Chr8 11499583 11521529 -
Vra Vra6g1413 Chr6 27835406 27851581 +
Lasa Lasa5g02855 Chr5 513474803 513482515 +
Seca Seca4g02394 Chr4 40746155 40754884 +