Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01428 ATGGCTAACAATGCATCAGCCTGTGCTGAGAGGGCAACTAGTGACCTGCTGATTGGGCCAGACTGGGCAATTAACATAGAACTGTGTGATATCATTAATATGGATCCTAGGCAAGCAAAGGATGCAATAAAGATACTTAAGAAGCGATTGGGCAATAAAAATCCCAAAATACAACTTCTGGCTCTTTTTGCATTGGAAACCCTTAGTAAAAATTGTGGTGACAGTGTATTTCAACAGATCATTGAGCGGGATATCTTACTTGACATGGTTAAAATAGTGAAGAAGAAGCCTGACTTAAGTGTGAAGGAAAAGATATTGATTTTGATTGATACATGGCAAGAAGCTTTTGGTGGACCAAATGGAAGGTATCCCCAATACCATGCGGCATATAATGAATTAAAGTCTGCTGGAGTTGAATTCCCCCCACGAAAAGAGAATAGTGTTCCTTTCTTCACTCCTCCTCAAACCCAGTCAGTTGGTCATCTTGCTGCTGCAGAATATGATGCTTCTGCTATTCAGCCCTCTATTCAGTCTGATGCATCTGGCCTTAGTTTGCCAGAGATTCAGAATGCTCAAGGACTAGTAGATGTATTGACTGAAATGCTTAATGCCTTGGATCCTAAAAATCCTGAGGTTGTGAAGCAGGAGGTGATTGTTGACCTTGTTGACCAGTGTCGATCTTACCAAAAGCGTGTTTTGCTTCTTGTGAATGAGACTGCGGATGAACAGCTTTTATGTCAGGGGTTGGCACTGAATGACAGTCTTCAGCGAGTGCTTAGTCAACATGAAAATATTGTAAAAGCAAATCCTGATACAGGCACAAGAGGAGCAGAAACATCTATTCTTCCAGTTGTAAATGTAAACAATGAAGAGGATGATGAGTCAGACGATGATTTTGCCCAACTAGCCCATAGGTCATCACGAATTACTAATGCAGAGAGACGGAAACAAGTCAATGACAAGACAGAACCAGTGAGAGTAAACCCAATTCTTCCCCCACCACCAGCACCAAAAAAACCAATCTTCTCTGATGCTGGTATGATTGATTACCTCAGTGGTGATGCGTACAGAACAGAAGGATCCTATGAACACTCTGAACCAATTTCATATGCCGAGCCCCTTCATTTTAGTTCTAATAATCCTGTTTCAACCACTGCAACACTGTCTTCCTCTCCGCCTCATTCTGCAAGTACCTCATCACCGATTTTAAGCAGGCAGCCTCTGTCTGATGAATCATCTTCCATCAATAAATCCTCAGAAATCCTTATTGCAAATCCTCGTGAAACACGATCTCCAGGTTTTGTTACACAGCCCCCTTCAATGGTTAATCAGAGACAGCAATTTTCTGAGCAACAAGGTGTGTCTCATCCAAGTTCTGGGTCCAGTTCCTCAAATGACAGCTTGTTGGCACAAACCCAGAATCTATCTCTGAATTCATCTACTCCAACCAAACAAGAGAAGCCGGAAGATGTCCTTTTTAAAGATCTACTTGACTTTGCAAAATCCAAAACCTCATCACCCTCCAAACCCAGTAGTAGACCATTTTGA 1548 0.4199 MANNASACAERATSDLLIGPDWAINIELCDIINMDPRQAKDAIKILKKRLGNKNPKIQLLALFALETLSKNCGDSVFQQIIERDILLDMVKIVKKKPDLSVKEKILILIDTWQEAFGGPNGRYPQYHAAYNELKSAGVEFPPRKENSVPFFTPPQTQSVGHLAAAEYDASAIQPSIQSDASGLSLPEIQNAQGLVDVLTEMLNALDPKNPEVVKQEVIVDLVDQCRSYQKRVLLLVNETADEQLLCQGLALNDSLQRVLSQHENIVKANPDTGTRGAETSILPVVNVNNEEDDESDDDFAQLAHRSSRITNAERRKQVNDKTEPVRVNPILPPPPAPKKPIFSDAGMIDYLSGDAYRTEGSYEHSEPISYAEPLHFSSNNPVSTTATLSSSPPHSASTSSPILSRQPLSDESSSINKSSEILIANPRETRSPGFVTQPPSMVNQRQQFSEQQGVSHPSSGSSSSNDSLLAQTQNLSLNSSTPTKQEKPEDVLFKDLLDFAKSKTSSPSKPSSRPF 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01428 515 SUPERFAMILY GAT-like domain 141 267 - -
Spst8g01428 515 MobiDBLite consensus disorder prediction 381 492 - -
Spst8g01428 515 CDD GAT_GGA-like_plant 187 265 - -
Spst8g01428 515 ProSiteProfiles GAT domain profile. 179 267 IPR004152 GO:0035091|GO:0043130
Spst8g01428 515 Pfam GAT domain 194 267 IPR004152 GO:0035091|GO:0043130
Spst8g01428 515 MobiDBLite consensus disorder prediction 304 342 - -
Spst8g01428 515 MobiDBLite consensus disorder prediction 381 486 - -
Spst8g01428 515 FunFam TOM1-like protein 2 4 151 - -
Spst8g01428 515 CDD VHS 10 135 - -
Spst8g01428 515 PANTHER TOM1-LIKE PROTEIN 2 508 IPR044836 GO:0035091|GO:0043130|GO:0043328
Spst8g01428 515 MobiDBLite consensus disorder prediction 304 322 - -
Spst8g01428 515 ProSiteProfiles VHS domain profile. 12 141 IPR002014 GO:0035091|GO:0043130
Spst8g01428 515 SUPERFAMILY ENTH/VHS domain 7 142 IPR008942 -
Spst8g01428 515 Gene3D - 180 274 IPR038425 -
Spst8g01428 515 SMART VHS_2 5 137 IPR002014 GO:0035091|GO:0043130
Spst8g01428 515 PIRSF TOM1 1 513 IPR014645 -
Spst8g01428 515 Pfam VHS domain 9 136 IPR002014 GO:0035091|GO:0043130
Spst8g01428 515 Gene3D - 2 158 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01428 Spst-Chr8 13427154 13433355 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01428 - - gmx:100779405 718.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01428 8 13427154 13433355 Spst8g01428 8 13427154 13433355 ECH
Spst8g01428 8 13427154 13433355 Spst9g01374 9 13518699 13528861 PCT