Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00678 ATGGTGAATTCCATGGTTGAACGCGCCACCAGCGACATGCTCATAGGCCCCGATTGGGCCATGAACATCGAGATCTGCGACATGCTCAATCACGACCCTGGGCAAGCAAAGGATGTTGTTAAAGGCATAAAGAAGCGGATTGGAAGTAAAAATTCAAAAGTTCAACTTCTTGCACTAACTTTGCTGGAGACAATCATAAAAAACTGTGGAGATATTGTTCACATGCATGTTGCAGAGAGAGATGTGCTTCATGAGATGGTGAAAATATTAAAAAAGAAGTCTGATTCTCATGTCAAAGAGAAGATACTCGTTCTTATAGATACCTGGCAAGAAGCTTTTGGTGGCCCGAGGGCAAGATATCCACAATATTATGCTGCTTACCAGGAACTGTTGCGTGCTGGAGCAGTATTCCCTCAGAGGTCTGAACAATCTGCGCCTGTATTCACACCTCCACAAACCCAGCCACTGGCATCATACCCTCAAAATATACGTGACTCAGAGGCTCGCCAGGACACAGCTGAGTCCTCTGCAGAGTCTGAGTTTCCAACACTAAGTTTGACTGAAATTCAGAATGCACGTGGCATCATGGATGTTCTTGCAGAAATGCTCAATGCCTTGGACCCTAGTAACAAAGAAGGAGTTAGACAGGAAGTTATTGTTGATTTGGTGGAGCAGTGTCGAACTTACAAGCAGAGAGTGGTACACCTTGTCAACTCAACTTCGGATGAATCACTGCTATGCCAAGGACTGTCCCTGAATGATGATCTGCAGCGTGTACTGGCCAAACACGAATCTATTTCTTCAGGAACTTCTACCCAAAACCAGAATCACACAGAGAATTCAAAACCTACACCTGCTCGAGCTCTTGTAGATATTGATGCTCCTTTGGTTGATACTGGAGATACTAGCAAACAAACTGATGGGAGATCCTTGTCCAATGTTGAAGAAGGATCCCAAACATTGAATCAGTTATTGCTTCCTGCACCTCCAACTCCTAATGGTTCAACAATCCCTGCCAAGGTTGATCCCAAATGGGACCTGCTCAGTGGCGATGACTATAACTCACCAAAAGCAGATACTTCCAATGCTCTTGTTCCTCTTGGAGAACAACAACCTGCCGGTCCTGTTTCTCAGCAGAATGCCCTTGTTCTTTTTGATATGTTTTCTAATGGAAATAATGAACCTAAATCTGTCAATACCCAGTTACCCCAGCCAGCTAATGTTGCTGGTGAAACTGATCCATTTGCTCCCCAATTTCAACAGCAGCAAACAGTCATATCTCAAGGTGGATTTTACTCTAATGGAACTGTCCCAAATGCAGGTTCACCTCAGTATGAACAATCATTGTATACACAAAGTACAGGTCCTGGCTGGAATGGTCAGGTTGCACAACAGCAACAGCCACCTTCGCCTGGATATGCTACACAAAGCAGTGGATCATTGCCACCACCTCCATGGGAAGCTCAACCAGCAGATAATGGAAGTCCAGTAGCGGGCACTCAGTATCCACACATGCAGAATGCTGCACATCCTCCAGGGCCTCAAGCAATGGGCAATGATCAGGGTGTTGGTATGTATATGCAGCCAAATGCTAACAGCCATATGTCAGCGATCAATAATCATGTTGGGAGCAATCAAATGGGCTTGCAACCTCACCATATTCAAGGTGTTGCCGGGCCCTACATGGGTATGGCTCCACATCAAATGCAGGGTGGTCCTGTGATGTATCCTCAACAGATGTACGGAAACCAATTCATGGGATATGGCTATGATCAACAACAAGGAGTTCCATATATTGAGCGGCAAATGTATGGCATGTCTGTTAGAGATGATAGTGGTTTGAGAAACCCTTATCAAGTTTCTACTACATCTTATGCTCCATCTGGGAAGCCTTCCAAACCAGAGGATAAGTTATTTGGAGACCTTGTTGACATGGCAAAAGTGAAGCCCAAACCCACCACTCCTGGCCGAGCTGGTAGCATGTAA 1986 0.4522 MVNSMVERATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSKNSKVQLLALTLLETIIKNCGDIVHMHVAERDVLHEMVKILKKKSDSHVKEKILVLIDTWQEAFGGPRARYPQYYAAYQELLRAGAVFPQRSEQSAPVFTPPQTQPLASYPQNIRDSEARQDTAESSAESEFPTLSLTEIQNARGIMDVLAEMLNALDPSNKEGVRQEVIVDLVEQCRTYKQRVVHLVNSTSDESLLCQGLSLNDDLQRVLAKHESISSGTSTQNQNHTENSKPTPARALVDIDAPLVDTGDTSKQTDGRSLSNVEEGSQTLNQLLLPAPPTPNGSTIPAKVDPKWDLLSGDDYNSPKADTSNALVPLGEQQPAGPVSQQNALVLFDMFSNGNNEPKSVNTQLPQPANVAGETDPFAPQFQQQQTVISQGGFYSNGTVPNAGSPQYEQSLYTQSTGPGWNGQVAQQQQPPSPGYATQSSGSLPPPPWEAQPADNGSPVAGTQYPHMQNAAHPPGPQAMGNDQGVGMYMQPNANSHMSAINNHVGSNQMGLQPHHIQGVAGPYMGMAPHQMQGGPVMYPQQMYGNQFMGYGYDQQQGVPYIERQMYGMSVRDDSGLRNPYQVSTTSYAPSGKPSKPEDKLFGDLVDMAKVKPKPTTPGRAGSM 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00678 661 Gene3D - 1 155 IPR008942 -
Cca05g00678 661 MobiDBLite consensus disorder prediction 299 318 - -
Cca05g00678 661 MobiDBLite consensus disorder prediction 614 629 - -
Cca05g00678 661 CDD VHS 2 132 - -
Cca05g00678 661 CDD GAT_GGA_like_plant 188 266 - -
Cca05g00678 661 SUPERFAMILY ENTH/VHS domain 3 138 IPR008942 -
Cca05g00678 661 PANTHER TOM1-LIKE PROTEIN 1 654 IPR044836 GO:0035091|GO:0043130|GO:0043328
Cca05g00678 661 MobiDBLite consensus disorder prediction 264 318 - -
Cca05g00678 661 ProSiteProfiles VHS domain profile. 9 138 IPR002014 GO:0035091|GO:0043130
Cca05g00678 661 MobiDBLite consensus disorder prediction 613 661 - -
Cca05g00678 661 MobiDBLite consensus disorder prediction 430 506 - -
Cca05g00678 661 Gene3D - 183 276 IPR038425 -
Cca05g00678 661 MobiDBLite consensus disorder prediction 264 283 - -
Cca05g00678 661 Pfam GAT domain 194 268 IPR004152 GO:0035091|GO:0043130
Cca05g00678 661 PANTHER TARGET OF MYB PROTEIN 1 1 654 - -
Cca05g00678 661 Pfam VHS domain 3 129 IPR002014 GO:0035091|GO:0043130
Cca05g00678 661 ProSiteProfiles GAT domain profile. 180 268 IPR004152 GO:0035091|GO:0043130
Cca05g00678 661 SMART VHS_2 2 134 IPR002014 GO:0035091|GO:0043130
Cca05g00678 661 MobiDBLite consensus disorder prediction 430 482 - -
Cca05g00678 661 SUPERFAMILY GAT-like domain 141 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00678 Cca-Chr5 17243824 17261383 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00678 - - gmx:100809022 1204.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00678 05 17243824 17261383 Cca05g00678 05 17243824 17261383 ECH
Cca05g00678 05 17243824 17261383 Cca03g01065 03 25862827 25869655 PCT