Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02397 ATGGAAATGGTTGGCAAGGAGGGTTTGAGAACTGGGGTGTTGAACTTGAGTTTTGGGAAGCTTATGATGGTTGGTGGTGGTGAAAATAGTGGGAAAGGAGTGAACTTGAAAGCTGGGGTGATCACTGATTGGAAAGATATTCCAGTGGAGCTTTTGATGCAAATTTTGTCACTTGTTGATGATCAAACGGTGATCATAGCTTCTGAAGTTTGTCGTGGGTGGAGAGAGGCAATTTGCTTTGGCCTTACCCGGATGAAGTTTGTCTATGTTGTTGAACATTTACATTTTAGGTCAAATAGACAGGGCAACTTGGTTTTAGAAAATTTAAACAAGGAGACTGATGATTGTTCTCAATGTTTTTGGGGGTGTAGCAAGAACATGAATAACTTGGTCCTATCTCTTACTCCTAAATTTACAAAACTGCAAACTTTAATCCTTCGTCAAGACAAACCTCAACTAGAGGACAATGCTGTTGCGTCTATTGCAAATTTCTGTCACGACCTGCAAATCCTGGACCTCAGCAAAAGTTTCAAGCTCACAGATCGTTCATTATATGCCATAGCCCTAGGTTGTTGGCATCTTACAAAACTGAACATTAGTGGTTGTTCAGCCTTTAGTGACAGTGCTCTGGCTTACCTAGCCAGTTTATGCAGAGAGCTGAAAGTATTGAATCTATGTGGATGTGTTAAAGCTGCATCCGACACTGCATTACAGGCAATTGGACGTTACTGCAATCAGTTACAGTCTTTGAACCTTGGATGGTGTGAAAATGTCAGTGATGTTGGAGTAACGAGTTTAGCGTATGGCTGCCCTGATCTTCGAACACTTGACTTGTGTGGTTGTTACAACATTGACTCATGTGTTGTTATTTCAGATGACAGTGTGATTGCCTTGGCAAACAGATGTCCTCATCTTAGGTCCCTTGGACTGTACTACTGCCAAAACATAACAGACAGAGCAATGTATTCTTTGGCACAAAGCAAAGTGAAGAATAGAATGTGGGGATCTGTGAAAGGTGGAAATGATGAGGATGGATTAAGGACTTTGAACATCAGCCAATGCACAGCACTCACCCCTTCTGCTGTGCAGGCTGTGTGTGACTCATCCCCTGCACTCCACACCTGTTCTGGAAGACACTCACTCATCATGAGTGGTTGTCTCAGTCTGACATCTCACACCGTGGTATCAGCACCATTCCTAATACAGCACATTGAGCCACACTGGTTCATACAGAAACACACTTTGGAGAAGTTCACTTGA 1260 0.4278 MEMVGKEGLRTGVLNLSFGKLMMVGGGENSGKGVNLKAGVITDWKDIPVELLMQILSLVDDQTVIIASEVCRGWREAICFGLTRMKFVYVVEHLHFRSNRQGNLVLENLNKETDDCSQCFWGCSKNMNNLVLSLTPKFTKLQTLILRQDKPQLEDNAVASIANFCHDLQILDLSKSFKLTDRSLYAIALGCWHLTKLNISGCSAFSDSALAYLASLCRELKVLNLCGCVKAASDTALQAIGRYCNQLQSLNLGWCENVSDVGVTSLAYGCPDLRTLDLCGCYNIDSCVVISDDSVIALANRCPHLRSLGLYYCQNITDRAMYSLAQSKVKNRMWGSVKGGNDEDGLRTLNISQCTALTPSAVQAVCDSSPALHTCSGRHSLIMSGCLSLTSHTVVSAPFLIQHIEPHWFIQKHTLEKFT 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02397 419 Gene3D Ribonuclease Inhibitor 286 405 IPR032675 -
Vimu1g02397 419 Gene3D - 40 81 - -
Vimu1g02397 419 Gene3D Ribonuclease Inhibitor 106 285 IPR032675 -
Vimu1g02397 419 Pfam F-box-like 45 78 IPR001810 GO:0005515
Vimu1g02397 419 SUPERFAMILY F-box domain 43 85 IPR036047 GO:0005515
Vimu1g02397 419 Pfam Leucine Rich repeat 302 325 IPR001611 GO:0005515
Vimu1g02397 419 Pfam Leucine Rich repeat 244 267 IPR001611 GO:0005515
Vimu1g02397 419 SMART LRR_CC_2 217 243 IPR006553 -
Vimu1g02397 419 SMART LRR_CC_2 343 368 IPR006553 -
Vimu1g02397 419 SMART LRR_CC_2 270 301 IPR006553 -
Vimu1g02397 419 SMART LRR_CC_2 165 190 IPR006553 -
Vimu1g02397 419 SMART LRR_CC_2 191 216 IPR006553 -
Vimu1g02397 419 SMART LRR_CC_2 302 327 IPR006553 -
Vimu1g02397 419 SMART LRR_CC_2 244 269 IPR006553 -
Vimu1g02397 419 SMART LRR_CC_2 138 164 IPR006553 -
Vimu1g02397 419 PANTHER UNCHARACTERIZED 103 376 - -
Vimu1g02397 419 SUPERFAMILY RNI-like 127 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02397 Vimu-Chr1 34701175 34703451 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02397 K03875 - gmx:100793275 610.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02397 1 34701175 34703451 Vimu1g02397 1 34701175 34703451 ECH
Vimu1g02397 1 34701175 34703451 Vimu10g02358 10 34375325 34376410 PCT