Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0715 ATGGTGAATTCCATGGTTGAACGCGCCACGAGCGACATGCTCATAGGACCCGATTGGGCCATGAACATCGAGATCTGCGACATGCTCAATCATGACCCTGGGCAAGCAAAGGATGTTGTTAGAGGCATAAAGAAGCGGATTGGaagtaaaaattcaaaagttcAACTTCTTGCACTAACTTTGCTGGAGACAATCATAAAGAACTGTGGAGATATTGTTCACATGCATGTTGCAGAGAGAGATGTGCTTCATGAGATGGTGAAAATAGTAAAGAAGAAGCCTGATTTTCATGTCAGAGAGAAGATACTGATTCTTATAGATACTTGGCAAGAAGCTTTTGGAGGCCCGAGGGCAAGATATCCACAATATTATGCTGCTTACCAGGAACTGTTGCGTGCTGGGGCAGTATTCCCTCAGAGGTCTGAACAATCTGCACCTGTATTCACACCTCCACAAACACAGCCATTGGCATCATACCCTCAAAATATACGCGACTCAGATGCTCGCCAGGACCCAGCTGAGTCCTCTGCAGAGTCTGAGTTTCCAACGCTAAGTTTGAGCGAAATTCAGAATGCACGTGGCATCATGGATGTTCTTGCAGAAATGCTCAATGCCTTGGACCCTAGTAACAAAGAAgGGCTTAGACAGGAGGTTATTGTTGATTTGGTGGAGCAGTGTCGAACTTACAAGCAGAGAGTTGTACACCTTGTCAACTCAACTTCGGATGAATCACTGCTATGCCAAGGACTAGCCCTGAATGATGATCTGCAGCGTGTACTGGCCAAGCACGAATCTATTTCTTCAGGAACTTATACCCAAAAACAGAATCACACAGAGAATTCAAAACCTACACCTGCTGGAGCTCTTGTAGACATTGATGCTCCTTTGGTTGATACTGGAGATAGAAGCAAACAAACTGATGGGAGATCCTCTTCTAATGTTAAAGCAGGGTCCCAAACATTGAATCAATTACTACTTCCTGCACCTCCAACTTCTAATGGTTCAACAATCCCTGCCAAGGTTGATCCCAAATTGGACCTGCTCAGTGGCGATGACTATAACTCACCAAAAGCAGATACTTCAAATGCTCTTGTTCGTCTAGGAGAACAACAACCTGCCAGTCCTGTTTCTCAACAGAATGCCCTTGTTCTTTTTGATGTGTTTTCTAATGGAAATAATGTACCTACATCTGTCAATACCCAGCTACCCCAGCCAGCTAATGTTACTGGCCAAACCAGTCCATATGCTCCCCAATTTCAGCAACAGCAAACAGTCATATCTCAAGGTGGATTTTACCCCAATGGAAATGTCCCAAATGCAGGTTCACCTCAGTATGAGCAGTATACACAAAGTACAGGTCCTGCCTGGAATGGTCAGGTTGCACAACAGCAACAGCCACCTTCGCCTGTTTATGGTACACAAAGCAGTGGATCATTGCCACCACCTCCCTGGGAAGCTCAACCAGCAGATAATGGAAGTCCAGTAGCGGGCACTCAGTATCCACATGTGCAGAATGCTGCACATCCTCTGGGGCCTCGGGCAATGGGCAATGACCAGGGTGTTAGTATGTATATGCAGCCAAATGCTAACAGCCATATGTCAGCAATCAATAACCATGTTGGGAGCAATCAAATGGGCTTGCAACCTCAGCATATGCAGGGTGTTGCAGGGCCCTACATGGGTATGGCTTCACATCAAATGCATGGTGGTCCTGTGATGTATCCTCAACAGATGTACGGAAACCAATTTATGGGATATGGCTATGATCAGCAACAAGTTCCATATATTGAGCGGCAAATGTATGGTATGTCTGTTAGAGATGATAGTGGTTTGAGAAACTCTTACCAAGTTTCTACTACATCTTATTTTCCATCTGGGAAGCCTTCCAAGCCAGAGGATAAGTTGTTTGGAGACCTTGTTGACATGGCAAAAGTGAAGCCCAAACCCACTCCAGGCCGAGCTGGTAGCATGTAA 1974 0.4514 MVNSMVERATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVRGIKKRIGSKNSKVQLLALTLLETIIKNCGDIVHMHVAERDVLHEMVKIVKKKPDFHVREKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAVFPQRSEQSAPVFTPPQTQPLASYPQNIRDSDARQDPAESSAESEFPTLSLSEIQNARGIMDVLAEMLNALDPSNKEGLRQEVIVDLVEQCRTYKQRVVHLVNSTSDESLLCQGLALNDDLQRVLAKHESISSGTYTQKQNHTENSKPTPAGALVDIDAPLVDTGDRSKQTDGRSSSNVKAGSQTLNQLLLPAPPTSNGSTIPAKVDPKLDLLSGDDYNSPKADTSNALVRLGEQQPASPVSQQNALVLFDVFSNGNNVPTSVNTQLPQPANVTGQTSPYAPQFQQQQTVISQGGFYPNGNVPNAGSPQYEQYTQSTGPAWNGQVAQQQQPPSPVYGTQSSGSLPPPPWEAQPADNGSPVAGTQYPHVQNAAHPLGPRAMGNDQGVSMYMQPNANSHMSAINNHVGSNQMGLQPQHMQGVAGPYMGMASHQMHGGPVMYPQQMYGNQFMGYGYDQQQVPYIERQMYGMSVRDDSGLRNSYQVSTTSYFPSGKPSKPEDKLFGDLVDMAKVKPKPTPGRAGSM 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0715 657 PANTHER TARGET OF MYB PROTEIN 1 1 651 - -
Ssu5g0715 657 ProSiteProfiles GAT domain profile. 180 268 IPR004152 GO:0035091|GO:0043130
Ssu5g0715 657 CDD VHS 2 132 - -
Ssu5g0715 657 CDD GAT_GGA_like_plant 188 266 - -
Ssu5g0715 657 MobiDBLite consensus disorder prediction 142 182 - -
Ssu5g0715 657 MobiDBLite consensus disorder prediction 428 480 - -
Ssu5g0715 657 Gene3D - 183 276 IPR038425 -
Ssu5g0715 657 MobiDBLite consensus disorder prediction 142 165 - -
Ssu5g0715 657 ProSiteProfiles VHS domain profile. 9 138 IPR002014 GO:0035091|GO:0043130
Ssu5g0715 657 MobiDBLite consensus disorder prediction 267 283 - -
Ssu5g0715 657 SUPERFAMILY ENTH/VHS domain 3 138 IPR008942 -
Ssu5g0715 657 Gene3D - 1 135 IPR008942 -
Ssu5g0715 657 PANTHER TOM1-LIKE PROTEIN 1 651 IPR044836 GO:0035091|GO:0043130|GO:0043328
Ssu5g0715 657 Pfam GAT domain 194 268 IPR004152 GO:0035091|GO:0043130
Ssu5g0715 657 MobiDBLite consensus disorder prediction 267 319 - -
Ssu5g0715 657 SUPERFAMILY GAT-like domain 141 269 - -
Ssu5g0715 657 SMART VHS_2 2 134 IPR002014 GO:0035091|GO:0043130
Ssu5g0715 657 MobiDBLite consensus disorder prediction 428 506 - -
Ssu5g0715 657 Pfam VHS domain 3 129 IPR002014 GO:0035091|GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0715 Ssu-Chr5 17664958 17677977 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0715 - - gmx:100809022 1181.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0715 5 17664958 17677977 Ssu1g2926 1 76827045 76833239 PCT