Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3177 ATGGTGAATTCTATGGTTGAACGCGCCACCAGTGATATGCTCATCGGTCCCGATTGGGCCATGAATATCGAGATCTGTGACATGCTCAATCATGACCCTGGGCAAGCAAAGGACGTTGTCAAAGGTATAAAGAGGAAGATTGGAAGTAGAAATTCTAAAGTTCAACTCCTTGCACTAACTTTGCTGGAAACAATCATAAAGAACTGTGGAGATATGGTTCACATGCATGTTGCAGACAGAGATGTGCTTCATGAGATGGTGAAAATAGTAAAGAAAAAGCCTGATTTTCATGTCAAAGAGAAGATACTGGTTCTTATAGATACTTGGCAAGAAGCTTTTGGTGGACCAAGGGCAAGATATCCACAATACTATGCTGCATATCAGGAACTGTTGCGTGCCGGGGCAGTATTCCCCCAGAGATCTGAACAATCTGCACCCGTATTCACTCCTCCACAAACACAACCGTTGGCTTCATACCCTGCAAACATACGTGACGCGGATGCTCGGCCAGACACAGCTGAGACCTCTGCAGAATCTGAATTTCCAACGCTAAGTTTGAGCGAAATACAGAATGCACATGGTATTATGGATGTTCTTGCAGAAATGCTCAATGCAATAGACCCCAATAACAAAGAAGGGCTCAGACAGGAGGTTATTGTTGATTTGGTGGAGCAGTGTAGAACATACAAGCAAAGAGTGGTACACCTTGTAAACTCAACTACGGATGAATCACTGCTATGCCAGGGACTAGCTCTCAATGATGATCTGCAGCGTCTACTTGCTAGGCATGAATCTATTTTATCAGGATCTTCTACTCAAAATGGAAATCAGATAGAGAATTCAAAACCTGCATCTTCCGGGCAACTTGTAGATATTGATGCTCCTTTGGTTGACACTGGAGATACTGGTAAACAAACTGATGGGAGGTCCTCTTCTGGTGCTGAAGCAGGGTCCCAAACATTGAATCAGTTAATGCTTCCCGCGCCAGCTACATCCAATGGTTCAGCTGTACCTGCAAAAGTTGATCCCAAGTGGGACCTGCTCAGTGGTGATAACTATAACTCACCAAAAGCAGATACTTCACTTGCTCTTGTTCCTATAGGAGAACAACAACCTGCCACTCCTGTGTCTGGTCAGAATGCCCTTGTTCTTTTTGATATGCTTTCTAATGGAGACAATGCACCTACAGCTGTCAACACCCAGCCGAACCAGCAAACTAATGTTGCTGGACAATCTGATCCATTTACTCCCCAATATCAACAACAGCAGACATTCACATCTCAAGGTGGATTTTTCCCCAATGGGAATGTGCCAAATGCTGGTTCGCCTCAGTATGAGCAATCACAGCATACACAAAATACAGCTCCTGCCTGGAATGGTCAGGTTCCAGAACAGCAACAGCCAGCTAACCCTTATGGTGCACAAACTAGTGGTTCATTGCCGCCACCTCCCTGGGAAACTCAACCGGCAGACAATGGCCCGGCAGCAGGTGCTCAGTATCCACAACCACCTCAATACAGTCATATGGCTATGCCACATGTACAGAGTGCCGCAAATCATCAAGGGCCTCAAGCAATGAGTTATGGCCAAGCTGGTGGTATGTATATGCAGCCAAATCCGAACGGCCATATGTCAGCAGTCAATAACCAGGTTGGAAGCAATCAATTTGGCATGCACCCTCAGCATATTCAAGGTGTTGCGGGGCCTTACATGGGTATGGCTTCACATCAAACACAAGGTGGTCCTGGTGTTCCCATGTATCCACAACAGATGTATGGAAACCAATTTGCAGGTTATGGTTACGGTCAACAACCAGGAGTTCAATACGTTGAGCAGCAAATGTATGGTCTGTCTGTCAGAGATGATAGTTATTTGCGACACTCTAATCAGGTTCCTACATCTTATGTTCCATCAGGGAGGCCCTCGAAGCCAGAGGATAAGTTATTTGGGGACCTTGTCGACATGGCAAAAGTGAAGCCAAAACCATCTCCGGCTCGAGCTGGTAGCATGTAA 2013 0.4575 MVNSMVERATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKRKIGSRNSKVQLLALTLLETIIKNCGDMVHMHVADRDVLHEMVKIVKKKPDFHVKEKILVLIDTWQEAFGGPRARYPQYYAAYQELLRAGAVFPQRSEQSAPVFTPPQTQPLASYPANIRDADARPDTAETSAESEFPTLSLSEIQNAHGIMDVLAEMLNAIDPNNKEGLRQEVIVDLVEQCRTYKQRVVHLVNSTTDESLLCQGLALNDDLQRLLARHESILSGSSTQNGNQIENSKPASSGQLVDIDAPLVDTGDTGKQTDGRSSSGAEAGSQTLNQLMLPAPATSNGSAVPAKVDPKWDLLSGDNYNSPKADTSLALVPIGEQQPATPVSGQNALVLFDMLSNGDNAPTAVNTQPNQQTNVAGQSDPFTPQYQQQQTFTSQGGFFPNGNVPNAGSPQYEQSQHTQNTAPAWNGQVPEQQQPANPYGAQTSGSLPPPPWETQPADNGPAAGAQYPQPPQYSHMAMPHVQSAANHQGPQAMSYGQAGGMYMQPNPNGHMSAVNNQVGSNQFGMHPQHIQGVAGPYMGMASHQTQGGPGVPMYPQQMYGNQFAGYGYGQQPGVQYVEQQMYGLSVRDDSYLRHSNQVPTSYVPSGRPSKPEDKLFGDLVDMAKVKPKPSPARAGSM* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3177 670 Gene3D - 1 138 IPR008942 -
Tpr1g3177 670 ProSiteProfiles VHS domain profile. 9 138 IPR002014 GO:0035091|GO:0043130
Tpr1g3177 670 Gene3D - 183 275 IPR038425 -
Tpr1g3177 670 PANTHER TARGET OF MYB PROTEIN 1 1 664 - -
Tpr1g3177 670 SUPERFAMILY GAT-like domain 141 269 - -
Tpr1g3177 670 CDD VHS 2 132 - -
Tpr1g3177 670 SMART VHS_2 2 134 IPR002014 GO:0035091|GO:0043130
Tpr1g3177 670 CDD GAT_GGA_like_plant 188 266 - -
Tpr1g3177 670 Pfam GAT domain 196 269 IPR004152 GO:0035091|GO:0043130
Tpr1g3177 670 ProSiteProfiles GAT domain profile. 180 268 IPR004152 GO:0035091|GO:0043130
Tpr1g3177 670 MobiDBLite consensus disorder prediction 268 287 - -
Tpr1g3177 670 MobiDBLite consensus disorder prediction 268 289 - -
Tpr1g3177 670 Pfam VHS domain 3 129 IPR002014 GO:0035091|GO:0043130
Tpr1g3177 670 PANTHER TOM1-LIKE PROTEIN 1 664 IPR044836 GO:0035091|GO:0043130|GO:0043328
Tpr1g3177 670 SUPERFAMILY ENTH/VHS domain 3 138 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3177 Tpr-Chr1 36241310 36249475 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3177 - - gmx:100809022 1038.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3177 1 36241310 36249475 Tpr1g3177 1 36241310 36249475 ECH