Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02546 ATGGTTGGAAAAGAGAACTTGAGGACTGAGGACTTGAACTTGTGCTTTGAGAAGCTTATGATGGTTGCTAGTGGAAATAGTGGGAAAAGGGTGAACATGGAAGCTGGAGTGAACACAGAATGGAAGGATATCCCAGTTGAACTATTGATGCAAATTTTGTCACTTGTGGATGATCAGACGGTGTTGATAGCATCTGAAGTTTGTCGTGGGTGGAGAGAGGCTATTTGCTTTGGCCTTACTCGTTTATCACTCTCATGGTGTAGTAAGAACATGAATAACTTGGTCCTATCTCTTGCTCCTAAGTTAACAAAATTGCAAACTCTAATCCTTCGGCAAGACAAACCTCAACTAGAGGACAATGCTGTTGAGACTATTGCAAATTTCTGTCATGACCTGCAGATCCTGGACCTTAGCAAAAGTTTCAAGCTTACTGATCGTTCACTGTATGCCATAGCCCTTGGTTGCCGTGATCTTACAAAACTGAACATCAGTGGTTGTTCAGCCTTGAGTGACAATGCCCTGGCTTACCTAGCCAGTTTATGCAGAAAGCTGAAGGTTTTGAACCTCTGTGGATGTGTTAAAGCTGCATCTGATACCGCATTACAGGCAATTGGACATTACTGCAATCAATTACAGTTTGTGAACCTTGGATGGTGTGAAAATGTCAGTGATGTTGGAGTGATGAGTTTAGCATACGGGTGCCCTGATCTTAGAAAACTTGACTTATGTGGTTGTGTCCTTATAACAGATGATAGTGTAATTGCCTTGGCCAACAGATGTCCTCATCTGAGGTCCCTTGGGCTATACTACTGCAGAAACATCACAGATAGAGCAATGTACTCTTTGGCACAAAGCAAGGTGAATAATAGGATGTGGGGATCTATGAAAGGTGGAAATGATGAGGATGGGCTAAGAACTTTGAACATTAGCCAATGTACAGCACTCACCCCCTCTGCTGTTCAGGCTGTTTGTGACTCATTCCCTGCACTTCACACTTGTTCTGGAAGACATTCACTCATCATGAGTGGTTGTCTGAATCTGACATCTGTGCATTGTGCATGTGCTGTCCAGGCACACCGTTCAATCAGCACTCTCCCTCATCCAGCTCATTGA 1113 0.4358 MVGKENLRTEDLNLCFEKLMMVASGNSGKRVNMEAGVNTEWKDIPVELLMQILSLVDDQTVLIASEVCRGWREAICFGLTRLSLSWCSKNMNNLVLSLAPKLTKLQTLILRQDKPQLEDNAVETIANFCHDLQILDLSKSFKLTDRSLYAIALGCRDLTKLNISGCSALSDNALAYLASLCRKLKVLNLCGCVKAASDTALQAIGHYCNQLQFVNLGWCENVSDVGVMSLAYGCPDLRKLDLCGCVLITDDSVIALANRCPHLRSLGLYYCRNITDRAMYSLAQSKVNNRMWGSMKGGNDEDGLRTLNISQCTALTPSAVQAVCDSFPALHTCSGRHSLIMSGCLNLTSVHCACAVQAHRSISTLPHPAH. 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02546 370 SUPERFAMILY RNI-like 67 284 - -
Seca8g02546 370 CDD F-box_AtSKP2-like 40 87 - -
Seca8g02546 370 SUPERFAMILY F-box domain 38 76 IPR036047 GO:0005515
Seca8g02546 370 Gene3D - 34 77 - -
Seca8g02546 370 FunFam F-box protein SKP2B 76 294 - -
Seca8g02546 370 Gene3D Ribonuclease Inhibitor 78 302 IPR032675 -
Seca8g02546 370 Pfam Leucine Rich repeat 234 257 IPR001611 GO:0005515
Seca8g02546 370 Pfam Leucine Rich repeat 208 231 IPR001611 GO:0005515
Seca8g02546 370 Pfam Leucine Rich repeat 260 283 IPR001611 GO:0005515
Seca8g02546 370 SMART LRR_CC_2 155 180 IPR006553 -
Seca8g02546 370 SMART LRR_CC_2 129 154 IPR006553 -
Seca8g02546 370 SMART LRR_CC_2 76 101 IPR006553 -
Seca8g02546 370 SMART LRR_CC_2 208 233 IPR006553 -
Seca8g02546 370 SMART LRR_CC_2 234 259 IPR006553 -
Seca8g02546 370 SMART LRR_CC_2 181 207 IPR006553 -
Seca8g02546 370 SMART LRR_CC_2 301 326 IPR006553 -
Seca8g02546 370 SMART LRR_CC_2 260 285 IPR006553 -
Seca8g02546 370 SMART LRR_CC_2 102 128 IPR006553 -
Seca8g02546 370 PANTHER UNCHARACTERIZED 68 334 - -
Seca8g02546 370 SMART fbox_2 44 83 IPR001810 GO:0005515
Seca8g02546 370 Pfam F-box-like 42 75 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02546 Seca-Chr8 57395652 57399519 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02546 K03875 - gmx:100793275 683.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g02546 8 57395652 57399519 Seca8g02546 8 57395652 57399519 ECH
Seca8g02546 8 57395652 57399519 Seca4g02432 4 41605492 41609622 PCT