Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04157 ATGGTGAATTCCATGGTTGAACGCGCCACGAGCGATATGCTCATCGGTCCCGATTGGGCCATGAATATTGAGATCTGTGACATGCTCAATCATGATCCTGGGCAAGCAAAGGACGTTGTCAAAGGTATAAAGAAGCGGATTGGAAGTAGACATTCTAAAGCTCAACTCCTTGCATTGACTTTGCTGGAGACAATCATAAAGAACTGTGGGGATATTGTTCACATGCATGTTGCAGAGAAAAATGTGCTTCATGAGATGGTGAGAATAGTAAAGAAAAAGCCTGATTTTCAAGTCAGAGAGAAGATATTGGTTCTTATAGATACTTGGCAAGAAGCTTTTGGAGGACCAAGGGCAAGATATCCACAATATTATGCTGCATACCAGGAACTGTTGCGTGCTGGGGCAGTATTTCCTCAGAGATCTGAGCAGTCTGCACCTGTATTTACTCCTCCACAAACACAACCGTTGGCTTCATACCCTCCAAATGTACGTGGCATGGATGGTCAGCCGGACACAGCTGAGACATCTGCAGAGTCAGAATTTCCGACACTAAGTTTGACCGAAATACAGAATGCACATGGTATAATGGACGTTCTCGCGGAAATGCTCAATGCAATAGACCCCAACAACAAAGAAGGGCTTAGACAGGAGGTTGTTGTTGATTTGGTAGAGCAATGTAGAACATACAAGCAGAGAGTGGTACACCTTGTAAACTCAACTACGGATGAATCATTGCTATGCCAAGGACTAGCTCTCAATGATGATCTGCAGCGTCTACTTGCCAGGCATGAATCTTTTTTGTCAGGACTTTCTAGTAAAAATGGAAATCACTTAGAGAATTCAAAACCTGCACCTGCTGGGCCACTTGTAGATGTTGATGCCCCATTGGTTGATACTGGAGATACTGGCAAACAAACTGATGGGAGGTCTTCTTCTGGTGCTGAAGCAGGCTCTCAAACATTGAATCAGTTAATGCTTCCCGCGTCAGCTACATCTAATGGTTCTGCTGTACCTGCCAAAGTTGATCCCAAGTGGGACCTTCTCAGTGGTGATACCTATGATTCTCCAAAAGCAGATACTTCGCTTGCTCTTGTTCCTCTGGGAGAACAACATGCTGCCAGTCCTGTATCTGATCAGAACGCCCTTGTTCTTTTTGATATGTTTTCTAATGGAGACAATGCATCCACGCCTGTCAATACCCAGCTAACCCAGCAAACTAATGTTGCTGGCCAATCTGGTCCATTTACTCCTCAATTTCAACAACAGCAGACATTCATATCTCAAGGTGGTTTTTACCCCAATGGAAGTGTGCCAAATGCTGGTTCACCTCAGTATGAGCAATCACTGCACACACAAAGTACAGGTCCTTCCTGGAATGGTCAGGTTGCAGAACCACAACAGCCAGCTTCTCCTTATGGTGCGCAAAGTAGTGGATCATTGCCGCCACCTCCGTGGGAATCTCAACCGGCTGACAATGGCAGTCAGCTAGCAGGTGCCCAGTATCCACAACCACCGCAAGTCAGTCATATGGCTACAACACATGTACAAAGTGCTGCAAATCATCAAATGCATCAAGCAATGGATTATGGCCAGGCTGGTGGTATGTATATGCAGCCGAATGCGAACAACCATATGTCAGCAAACAATAGCCATTTTGGAAGCAATCAATTAGGCATGCACCCTCAGCACATGCAAGGTGGTGCAGGGCACTACATGGGTATGGCTTCACATCAAATGCAAAGTGGTCCTGCAGTTTCCATGTATCCACAACAGATGTATGGAAACCAATATGTAGGTTATGGCTACGGTCAACAACAACAACAACACAGAGTTCCATACATTGAGCAGCAAATGCATGGAATGTCTGTAAGAGACGATAATTATTTGCGAAACTCTAATCAGGGTTCTACATCTTATGTTCCATCGGGGAAGCCATCCAAGCCAGAGGATAAGTTATTTGGGGACCTTGTGAACATGGCAAAAGTGAAGCCAAAAGCATCTCCAGGTCGAGCTGGTAGCATGTAA 2025 0.4519 MVNSMVERATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRHSKAQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVRIVKKKPDFQVREKILVLIDTWQEAFGGPRARYPQYYAAYQELLRAGAVFPQRSEQSAPVFTPPQTQPLASYPPNVRGMDGQPDTAETSAESEFPTLSLTEIQNAHGIMDVLAEMLNAIDPNNKEGLRQEVVVDLVEQCRTYKQRVVHLVNSTTDESLLCQGLALNDDLQRLLARHESFLSGLSSKNGNHLENSKPAPAGPLVDVDAPLVDTGDTGKQTDGRSSSGAEAGSQTLNQLMLPASATSNGSAVPAKVDPKWDLLSGDTYDSPKADTSLALVPLGEQHAASPVSDQNALVLFDMFSNGDNASTPVNTQLTQQTNVAGQSGPFTPQFQQQQTFISQGGFYPNGSVPNAGSPQYEQSLHTQSTGPSWNGQVAEPQQPASPYGAQSSGSLPPPPWESQPADNGSQLAGAQYPQPPQVSHMATTHVQSAANHQMHQAMDYGQAGGMYMQPNANNHMSANNSHFGSNQLGMHPQHMQGGAGHYMGMASHQMQSGPAVSMYPQQMYGNQYVGYGYGQQQQQHRVPYIEQQMHGMSVRDDNYLRNSNQGSTSYVPSGKPSKPEDKLFGDLVNMAKVKPKASPGRAGSM 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04157 674 SMART VHS_2 2 134 IPR002014 GO:0035091|GO:0043130
Vifa3g04157 674 MobiDBLite consensus disorder prediction 303 317 - -
Vifa3g04157 674 FunFam TOM1-like protein 2 1 148 - -
Vifa3g04157 674 Pfam VHS domain 3 129 IPR002014 GO:0035091|GO:0043130
Vifa3g04157 674 Gene3D - 183 274 IPR038425 -
Vifa3g04157 674 MobiDBLite consensus disorder prediction 626 651 - -
Vifa3g04157 674 CDD GAT_GGA-like_plant 188 266 - -
Vifa3g04157 674 MobiDBLite consensus disorder prediction 489 518 - -
Vifa3g04157 674 PANTHER TOM1-LIKE PROTEIN 1 668 IPR044836 GO:0035091|GO:0043130|GO:0043328
Vifa3g04157 674 MobiDBLite consensus disorder prediction 428 518 - -
Vifa3g04157 674 MobiDBLite consensus disorder prediction 428 476 - -
Vifa3g04157 674 ProSiteProfiles GAT domain profile. 180 268 IPR004152 GO:0035091|GO:0043130
Vifa3g04157 674 ProSiteProfiles VHS domain profile. 9 138 IPR002014 GO:0035091|GO:0043130
Vifa3g04157 674 SUPERFAMILY ENTH/VHS domain 3 138 IPR008942 -
Vifa3g04157 674 CDD VHS 2 132 - -
Vifa3g04157 674 Pfam GAT domain 196 269 IPR004152 GO:0035091|GO:0043130
Vifa3g04157 674 Gene3D - 1 135 IPR008942 -
Vifa3g04157 674 SUPERFAMILY GAT-like domain 141 269 - -
Vifa3g04157 674 MobiDBLite consensus disorder prediction 626 643 - -
Vifa3g04157 674 MobiDBLite consensus disorder prediction 271 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04157 Vifa-Chr3 1224802149 1224810137 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04157 - - gmx:100809022 988.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04157 3 1224802149 1224810137 Vifa3g04157 3 1224802149 1224810137 ECH
Vifa3g04157 3 1224802149 1224810137 Vifa2g02832 2 791653368 791658626 PCT