Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00070 ATGGTAACTCTGTTTCCACTTCGCAGGGTCTCTGTGGACAATGATAGTTGCCATGATTGTACACTGATCAAGTTTGATAGTATCAACAAACCTGGAATTCTGCTGGAAGTGGTTCAAATCCTGACAGATCTTGACTTCATAATTACCAAAGCTTACATATCTTCTGATGTATTTCATGTCACGGATCAACAAGGAAAGAAGATAACGGACAGCCAAACAATTGACTTCATTGAAAAGGTTCTAGGACCAAAGGGCCAGAACACAGAAGGAGTGAAGAGTTGGCAAGGAAAAAGGGTTGGAGTGCACTCAATTGGTGATCACACAGCCATTGAGCTCATTGGTCGAGACCGCCCCGGCCTCTTGTCTGAGATATCAGCAGTCCTTGCCAGCCTCCAGTTCAATGTGATTGCAGCTGAAGTTTGGACTCACAACAGGAGAATAGCTTGTGTCCTTTATGTCAATGATGCTACAAACCAAGCCATGGATGACTCAAAAAGATTGTCTATTATGGAGGAGCAGCTCAACCACATCCTACGCGGGTGTCAGGATGATGAGAAAGTGGCTAGGACCAGTTTCTCAATGGGTTTCACTCACATGGATCGGAGGCTCCACCAAATGCTATTTGCTGATAGGGACTATGAAAGTGCTGGAGTAACAACAACAACAGATGTTGATTGTGCTCCTTCTTTTAGGCCTAAAATCAGAATAGAACGCATCGTGGAGAAAGGTTACTCGGTGGTTAGTGTGAGATGCAAAGATCGGGCAAAATTAATGTTCGACATTGTTTGCACTCTCACTGACATGCAATATGTTGTCTTCCATGCTACAATCTCATCCGAAGGGCTTTATGCATCCCAGGAGTACTTTATACGGCACATGGATGGGTGCACGCTTGACACTGAAGGAGAGAAAGAAAGGGTCATCAAATGCATTGAAGCTGCTATTCAAAGAAGAGTTAGCGAGGGTGTGAGCCTAGAGCTGTGTGCAAAGGACAGAGTGGGGTTGCTGTCTGAGGTGACAAGGATCCTACGAGAGAATGGCTTAACAGTGAGTAGGGCAGGTGTGTCAACCGTAGGGGAGAAAGGGCTGAATGTGTTCTACGTGAGGGATGATGCATCAGGGAACCCTGTGGACATGAAGATCATCGAAGCACTACGCAAGGAAATTGGACAGACAGTGATGGTCAATGTGAAGAGGGTACCAGGCAGTGCCAAAGCACCACCTCAAACCCGAGGGTGGGCCAAAACAAGCTTCTTCTTTGGCAACTTGTTTGAAAGGTTCTTGACTTGA 1290 0.4589 MVTLFPLRRVSVDNDSCHDCTLIKFDSINKPGILLEVVQILTDLDFIITKAYISSDVFHVTDQQGKKITDSQTIDFIEKVLGPKGQNTEGVKSWQGKRVGVHSIGDHTAIELIGRDRPGLLSEISAVLASLQFNVIAAEVWTHNRRIACVLYVNDATNQAMDDSKRLSIMEEQLNHILRGCQDDEKVARTSFSMGFTHMDRRLHQMLFADRDYESAGVTTTTDVDCAPSFRPKIRIERIVEKGYSVVSVRCKDRAKLMFDIVCTLTDMQYVVFHATISSEGLYASQEYFIRHMDGCTLDTEGEKERVIKCIEAAIQRRVSEGVSLELCAKDRVGLLSEVTRILRENGLTVSRAGVSTVGEKGLNVFYVRDDASGNPVDMKIIEALRKEIGQTVMVNVKRVPGSAKAPPQTRGWAKTSFFFGNLFERFLT 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00070 429 Gene3D - 319 400 - -
Cca05g00070 429 ProSiteProfiles ACT domain profile. 109 192 IPR002912 -
Cca05g00070 429 CDD ACT_ACR_3 244 318 - -
Cca05g00070 429 SUPERFAMILY ACT-like 320 395 IPR045865 -
Cca05g00070 429 PANTHER FOUR ACT DOMAIN ACT DOMAIN PROTEIN WHICH PROTEIN 9 429 - -
Cca05g00070 429 SUPERFAMILY ACT-like 17 81 IPR045865 -
Cca05g00070 429 SUPERFAMILY ACT-like 104 179 IPR045865 -
Cca05g00070 429 Gene3D - 107 188 - -
Cca05g00070 429 Pfam ACT domain 324 387 IPR002912 -
Cca05g00070 429 Pfam ACT domain 109 146 IPR002912 -
Cca05g00070 429 ProSiteProfiles ACT domain profile. 324 402 IPR002912 -
Cca05g00070 429 ProSiteProfiles ACT domain profile. 22 93 IPR002912 -
Cca05g00070 429 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 9 429 IPR040217 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00070 Cca-Chr5 1508573 1514375 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00070 - - gmx:100789044 779.245
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00070 05 1508573 1514375 Cca05g00070 05 1508573 1514375 ECH
Cca05g00070 05 1508573 1514375 Cca03g01057 03 25689352 25716038 PCT