Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1244 ATGCTTGCTGCCGGTGGCGGTGCCGGAAACAATGGTAAAGGAGTGAAAATGAAGACTGGGGTGATCTCCGAATGGAAGGATATTCCGGAAGAACTTTTAATGCAAATTCTGGCACTTGTGGATGATCAGACGGTGATCACAGCTTCTGGTGTCTGTCGTGGGTGGAGAGATGCTCTTTGCTCTGGCCTTACCCGTTTATCACTGTCATGGTGCAGCAAGAACATGAATAACTTGGTTCTATCTTTTGCTCCTAAATTCACAAAATTGCAAACTCTAATCCTTCGTCAAGACAAGCCTCAACTAGAGGATAGTGCTGTTGAGACTATTGCAAATTGCTGCCATGACCTGCAGATCCTAAACCTGAGCAAAAGCTTCAAGCTGACTGATCGTTCACTGCGTGCCTTAGCCCTTGGTTGTCCTGATCTTACAAAACTGAACATCAGTGGGTGTTCAGCATTCAGTGACACTGCTCTGGCTTACCTAGCCAGTTTCTGCCGAAAATTGAAAATTTTAAATCTCTGTGGATGTGTTAAAGCTGCATCTGACACTGCATTGCAGGCTATTGGACGTTACTGCAATCAGTTGCAGTCTTTGAACCTTGGATGGTGCGAAAATGTTGGTGATGTTGGAGTGATGAGTTTAGCGCATGGGTGCCCTGATCTTAGAACACTTGACTTGTGTGGTTGTGTTCGTATAACAGATGAGAGTGTGATTGCTTTGGCTAACAGATGCCCTCATCTTATGTCTCTTGGGCTGTATTACTGTCAAAACCTCACGGACAGAGCAATTTATTCATTGGCCCACAGCACGGTGAGTAAGAGGATGTACGATGAGGATGGGTTAAGGACTCTGAACATCAGCCAATGTACTGCACTCACACCCTCTGCTGTTCAGGCACTATGTGACTCATTCCCAGCACTTCACACCTGCTCCGGCAGGCACTCACTCATTATGAGTGGCTGTCTCAATTTGACGTCTGTGCATTGTGCTTGTGCTGTCCATGCACACCGTGCAATCGCCACTTTTCCTCATCCAGCTCACTGA 1044 0.4655 MLAAGGGAGNNGKGVKMKTGVISEWKDIPEELLMQILALVDDQTVITASGVCRGWRDALCSGLTRLSLSWCSKNMNNLVLSFAPKFTKLQTLILRQDKPQLEDSAVETIANCCHDLQILNLSKSFKLTDRSLRALALGCPDLTKLNISGCSAFSDTALAYLASFCRKLKILNLCGCVKAASDTALQAIGRYCNQLQSLNLGWCENVGDVGVMSLAHGCPDLRTLDLCGCVRITDESVIALANRCPHLMSLGLYYCQNLTDRAIYSLAHSTVSKRMYDEDGLRTLNISQCTALTPSAVQALCDSFPALHTCSGRHSLIMSGCLNLTSVHCACAVHAHRAIATFPHPAH 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1244 347 Gene3D - 24 59 - -
Glsi10g1244 347 PANTHER UNCHARACTERIZED 56 311 - -
Glsi10g1244 347 FunFam F-box protein SKP2B 60 280 - -
Glsi10g1244 347 Pfam Leucine Rich repeat 192 215 IPR001611 GO:0005515
Glsi10g1244 347 Pfam Leucine Rich repeat 218 241 IPR001611 GO:0005515
Glsi10g1244 347 CDD F-box_AtSKP2-like 24 71 - -
Glsi10g1244 347 SMART LRR_CC_2 192 217 IPR006553 -
Glsi10g1244 347 SMART LRR_CC_2 60 85 IPR006553 -
Glsi10g1244 347 SMART LRR_CC_2 165 191 IPR006553 -
Glsi10g1244 347 SMART LRR_CC_2 218 243 IPR006553 -
Glsi10g1244 347 SMART LRR_CC_2 139 164 IPR006553 -
Glsi10g1244 347 SMART LRR_CC_2 113 138 IPR006553 -
Glsi10g1244 347 SMART LRR_CC_2 278 303 IPR006553 -
Glsi10g1244 347 SMART LRR_CC_2 86 112 IPR006553 -
Glsi10g1244 347 SMART LRR_CC_2 244 269 IPR006553 -
Glsi10g1244 347 SUPERFAMILY F-box domain 22 62 IPR036047 GO:0005515
Glsi10g1244 347 Gene3D Ribonuclease Inhibitor 60 277 IPR032675 -
Glsi10g1244 347 Pfam F-box domain 25 61 IPR001810 GO:0005515
Glsi10g1244 347 SUPERFAMILY RNI-like 59 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1244 Glsi-ChrGlsi10 8416386 8418263 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g1244 10 8416386 8418263 Glsi08g1042 08 7658041 7666191 CCT
Glsi10g1244 10 8416386 8418263 Glsi10g1244 10 8416386 8418263 ECH