Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02462 ATGGTTGGGAAGGAGAACTTGAGGACTGAGGACTTGAACTTGTGCTTTAAGAAGCTTATGATGGTAGGTGGTGTTTGTGGAAATAGTGGGAAAGGAGTGAACTTGAAAGCTGGGGTGATCACAGAATGGAAGGATATTCCAGTGGAACTTTTGATGCAAATTTTGTCACTTGTGGATGATCAAACGGTGATGATAGCTTCTGAAGTTTGTCGTGGGTGGAGAGATGCGATTTGCTTTGGCCTTACTCGTTTAGCACTATCATGGTGTAGCAAGAACATGAATAACTTGGTCCTATCTCTTGCTCCTAAGTTCACAAAATTGCAAACTCTAATCCTTCGTCAAGACAAGCCTCAACTAGAGGATAATGCTGTTGAGACTATTGCAAATTTCTGTCATGACCTGCAGATCCTGAACCTCAGCAAAAGTTTCAAGCTTACTGATCGTTCATTGTATGCCATAGCTCTTGGTTGTCCTGATCTTACGAAACTGAACATCAGTGGGTGTTCAGCCTTTAGCGACAATGCTCTGGCTTACCTAGCCAGTTTATGTAGAAAGCTGAAAGTTTTGAATCTCTGTGGATGTGTTAAAGCTGCATCAGATACTGCATTACAGGCAATTGGACATTACTGCAATCAGTTGCAGTCTTTGAACCTTGGATGGTGTGAAAATATCAGTGATGTTGGAGTGATGAGTTTAGCATATGGGTGCCCTGATCTTAGAACAGTTGACTTATGTGGTTGTGTCCTTATAACAGATGATAGTGTTATTGCCTTGGCAAACAGATGTCCTCATTTGAGGTCCCTTGGGCTGTACTTCTGCAAAAACATCACAGACAGAGCAATGTATTCATTGGCACAAAGCAAGGTAAACAATAGGATGTGGGGTTCTGTGAAAGGTGGAAATGATGAAGATGGGCTAAGGACTTTGAACATTAGCCAATGCACAGCACTCACCCCTTCTGCTGTTCAGGCTGTGTGTGATTCATTCCCTGCACTTCACACCTGCTCTGGAAGACATTCACTCATGATGAGTGGTTGTCTGAATCTGACATCAGTTCATTGTGCATGTGCTGTCCATGCACACCGTGCTATCACCACTCTCCCTCATCCAGCTCATTGA 1119 0.4325 MVGKENLRTEDLNLCFKKLMMVGGVCGNSGKGVNLKAGVITEWKDIPVELLMQILSLVDDQTVMIASEVCRGWRDAICFGLTRLALSWCSKNMNNLVLSLAPKFTKLQTLILRQDKPQLEDNAVETIANFCHDLQILNLSKSFKLTDRSLYAIALGCPDLTKLNISGCSAFSDNALAYLASLCRKLKVLNLCGCVKAASDTALQAIGHYCNQLQSLNLGWCENISDVGVMSLAYGCPDLRTVDLCGCVLITDDSVIALANRCPHLRSLGLYFCKNITDRAMYSLAQSKVNNRMWGSVKGGNDEDGLRTLNISQCTALTPSAVQAVCDSFPALHTCSGRHSLMMSGCLNLTSVHCACAVHAHRAITTLPHPAH* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02462 372 Gene3D Ribonuclease Inhibitor 80 304 IPR032675 -
Rops9g02462 372 CDD F-box_AtSKP2-like 42 89 - -
Rops9g02462 372 SUPERFAMILY F-box domain 43 81 IPR036047 GO:0005515
Rops9g02462 372 Pfam F-box-like 44 77 IPR001810 GO:0005515
Rops9g02462 372 SUPERFAMILY RNI-like 70 286 - -
Rops9g02462 372 Pfam Leucine Rich repeat 210 233 IPR001611 GO:0005515
Rops9g02462 372 Pfam Leucine Rich repeat 262 285 IPR001611 GO:0005515
Rops9g02462 372 Pfam Leucine Rich repeat 236 259 IPR001611 GO:0005515
Rops9g02462 372 Gene3D - 40 79 - -
Rops9g02462 372 SMART LRR_CC_2 78 103 IPR006553 -
Rops9g02462 372 SMART LRR_CC_2 210 235 IPR006553 -
Rops9g02462 372 SMART LRR_CC_2 183 209 IPR006553 -
Rops9g02462 372 SMART LRR_CC_2 104 130 IPR006553 -
Rops9g02462 372 SMART LRR_CC_2 236 261 IPR006553 -
Rops9g02462 372 SMART LRR_CC_2 157 182 IPR006553 -
Rops9g02462 372 SMART LRR_CC_2 262 287 IPR006553 -
Rops9g02462 372 SMART LRR_CC_2 131 156 IPR006553 -
Rops9g02462 372 SMART LRR_CC_2 303 328 IPR006553 -
Rops9g02462 372 FunFam F-box protein SKP2B 78 296 - -
Rops9g02462 372 PANTHER UNCHARACTERIZED 235 351 - -
Rops9g02462 372 SMART fbox_2 46 86 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02462 Rops-Chr9 45737791 45741675 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02462 K03875 - gmx:100793275 672.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g02462 9 45737791 45741675 Rops9g02462 9 45737791 45741675 ECH
Rops9g02462 9 45737791 45741675 Rops10g01996 10 36402115 36406126 PCT