Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu1g1201 . . Adu06g01945 . Aev06g1501 Ahy16g2050 . Aip06g02267 . Amo16g2667 Amo06g1948 . Arst6g02456 . . . Car03g01954 . . Dod01g2082 . . Gma19g01173 . Gso19g1027 . . . . . . . Lapu1g00316 Lasa3g02514 . . . . Lja1g1465 . . . . . Phac1g01589 . . Psa3g1968 Pste5g01489 . . . Spst1g03561 Ssu4g1642 Sto8g1467 Tpr6g1280 . Tsu07g03131 . . Vimu6g03304 . Vivi6g04457 .
Pvu1g1202 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g1203 . . . . . . . . . . . . . . . . . . . . . . . . . . Lal8g0976 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g1204 . . . . . . . . . . . Apr4g1419 Arst6g03430 . . . . . . . . . . . . . Lal8g0975 . Lal10g0510 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g1205 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g1206 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu1g00315 . . . . . Lja1g1464 . . . . . . . . . Pste5g01494 . . . . Ssu4g1641 . . . . . . . . . .
Pvu1g1207 . . Adu06g01911 . Aev06g1499 . . Aip06g02235 . . . Apr4g1380 Arst6g02455 . . . Car03g01974 Cca07g00544 . Dod01g2098 . . Gma19g01194 Gma03g01130 . . . . Lal10g0545 Lan10g0809 . . Lapu1g00314 Lasa3g02516 . . . . Lja1g1463 . . . . . Phac1g01592 Phco2g01359 . Psa3g1967 Pste5g01502 . . . Spst1g03560 Ssu4g1640 . Tpr6g1282 . Tsu07g03163 . . . . Vivi6g04455 .
Pvu1g1208 . . Adu06g01894 . Aev06g1470 Ahy16g2032 Ahy6g1789 Aip06g02217 . . . Apr4g1379 . . Bisa03g2530 . Car03g01975 Cca07g00526 Dere01g2279 . . Glsi12g2295 Gma19g01195 Gma03g01131 Gso19g1046 Gso3g1034 . . Lal10g0546 . . . Lapu1g00313 Lasa3g02541 . . . . Lja1g1462 . . . . . Phac1g01593 Phco2g01360 . Psa3g1966 . Pumo5g02449 Rops8g02635 Seca2g03740 . Ssu4g1639 Sto8g1466 Tpr6g1313 . Tsu07g03164 Vian2g01784 Vifa5g02145 Vimu6g03291 . Vivi6g04454 .
Pvu1g1209 . . Adu06g01888 . Aev06g1469 Ahy16g2029 Ahy6g1757 Aip06g02207 . Amo16g2644 . Apr4g1353 Arst6g02449 Bach8g01257 . Bva04g02060 . Cca07g00524 . Dod01g2100 . . Gma19g01196 Gma03g01133 Gso19g1047 Gso3g1035 Lal8g0939 . Lal10g0547 . . . . Lasa3g02542 . . . . . . . . . . Phac1g01597 Phco2g01361 . Psa3g1922 . Pumo5g02451 Rops8g02636 Seca2g03743 . Ssu4g1638 . Tpr6g1314 . . Vian2g01785 Vifa5g02146 Vimu6g03261 . Vivi6g04452 .
Pvu1g1210 Acco02g0987 Accr2g02738 Adu06g01887 . . Ahy16g2028 Ahy6g1740 Aip06g02206 Alju01g0981 . Amo06g1912 Apr4g1351 Arst6g02448 Bach8g01256 Bisa03g2528 Bva04g02061 Car03g01977 Cca07g00523 Dere01g2280 Dod01g2101 Enph2g0759 Glsi12g2296 Gma19g01197 Gma03g01134 Gso19g1048 Gso3g1036 Lal8g0938 . . Lan10g0814 Lan6g1605 . Lapu1g00312 Lasa3g02545 Lele05g0767 Lele06g0603 Lele07g0800 Lele08g0606 Lja1g1458 . . . Mibi02g0888 . Phac1g01598 Phco2g01362 Prci1g3440 Psa3g1920 Pste5g01509 Pumo5g02453 . Seca2g03745 . Ssu4g1637 Sto8g1465 Tpr6g1316 . Tsu07g03166 Vian2g01786 Vifa5g02148 Vimu6g03260 . Vivi6g03574 .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Pvu Pvu1g1201 Chr1 32562240 32570947 +
Adu Adu06g01945 Chr06 82401420 82408926 +
Aev Aev06g1501 Chr06 10754077 10766484 +
Ahy Ahy16g2050 Chr16 113657664 113661608 +
Aip Aip06g02267 Chr06 103485526 103492828 +
Amo Amo16g2667 Chr16 117827055 117831059 +
Amo Amo06g1948 Chr06 70423065 70427287 +
Arst Arst6g02456 Chr6 79146522 79153704 -
Car Car03g01954 Chr03 65594392 65619832 +
Dod Dod01g2082 Chr01 57241837 57258054 -
Gma Gma19g01173 Chr19 40384685 40393739 +
Gso Gso19g1027 Chr19 37938221 37941932 +
Lapu Lapu1g00316 Chr1 12146850 12157479 -
Lasa Lasa3g02514 Chr3 563111925 563115712 +
Lja Lja1g1465 Chr1 15785102 15794161 -
Phac Phac1g01589 Chr1 23461326 23465991 -
Psa Psa3g1968 Chr3 175332875 175337151 +
Pste Pste5g01489 Chr5 9520508 9530775 +
Spst Spst1g03561 Chr1 44877522 44885188 +
Ssu Ssu4g1642 Chr4 28621193 28628209 +
Sto Sto8g1467 Chr8 9364831 9366491 -
Tpr Tpr6g1280 Chr6 13293187 13297798 +
Tsu Tsu07g03131 Chr07 37235980 37240272 +
Vimu Vimu6g03304 Chr6 29565756 29568361 +
Vivi Vivi6g04457 Chr6 146020154 146023855 -
Pvu Pvu1g1202 Chr1 32572669 32572961 -
Pvu Pvu1g1203 Chr1 32573117 32574777 -
Lal Lal8g0976 Chr8 7471045 7473259 -
Pvu Pvu1g1204 Chr1 32576951 32578390 +
Apr Apr4g1419 Chr4 14270903 14273226 +
Arst Arst6g03430 Chr6 101981906 101983007 -
Lal Lal8g0975 Chr8 7467262 7469398 -
Lal Lal10g0510 Chr10 12404727 12406872 +
Pvu Pvu1g1205 Chr1 32578826 32579008 +
Pvu Pvu1g1206 Chr1 32603355 32604250 +
Lapu Lapu1g00315 Chr1 12121495 12124880 -
Lja Lja1g1464 Chr1 15779373 15783797 -
Pste Pste5g01494 Chr5 9549544 9577550 +
Ssu Ssu4g1641 Chr4 28603979 28609476 +
Pvu Pvu1g1207 Chr1 32633934 32637557 -
Adu Adu06g01911 Chr06 80482737 80486633 +
Aev Aev06g1499 Chr06 10724111 10731155 -
Aip Aip06g02235 Chr06 101275033 101278977 +
Apr Apr4g1380 Chr4 13686807 13700633 +
Arst Arst6g02455 Chr6 79146522 79153704 -
Car Car03g01974 Chr03 65792119 65799092 +
Cca Cca07g00544 Chr07 7758589 7768887 -
Dod Dod01g2098 Chr01 57474671 57483935 +
Gma Gma19g01194 Chr19 40630614 40640665 +
Gma Gma03g01130 Chr03 36533817 36542626 +
Lal Lal10g0545 Chr10 12993128 12996515 -
Lan Lan10g0809 Chr10 11230555 11241548 +
Lapu Lapu1g00314 Chr1 12087788 12092893 -
Lasa Lasa3g02516 Chr3 563348706 563352561 +
Lja Lja1g1463 Chr1 15766175 15777962 -
Phac Phac1g01592 Chr1 23834515 23839183 -
Phco Phco2g01359 Chr2 42483181 42491806 +
Psa Psa3g1967 Chr3 175328073 175330290 +
Pste Pste5g01502 Chr5 9587493 9611245 +
Spst Spst1g03560 Chr1 44852258 44861429 +
Ssu Ssu4g1640 Chr4 28550534 28560613 -
Tpr Tpr6g1282 Chr6 13339689 13348304 +
Tsu Tsu07g03163 Chr07 37579949 37586984 +
Vivi Vivi6g04455 Chr6 146002978 146006594 -
Pvu Pvu1g1208 Chr1 32684323 32689234 +
Adu Adu06g01894 Chr06 79990587 79996581 -
Aev Aev06g1470 Chr06 10419443 10434735 +
Ahy Ahy16g2032 Chr16 112735927 112743188 -
Ahy Ahy6g1789 Chr6 87356692 87364459 +
Aip Aip06g02217 Chr06 100432646 100435862 -
Apr Apr4g1379 Chr4 13677926 13686639 -
Bisa Bisa03g2530 Chr03 38233887 38239731 -
Car Car03g01975 Chr03 65799817 65806076 +
Cca Cca07g00526 Chr07 7513028 7525545 -
Dere Dere01g2279 Chr01 36998941 37000391 +
Glsi Glsi12g2295 Chr12 37341953 37345304 +
Gma Gma19g01195 Chr19 40644128 40650395 +
Gma Gma03g01131 Chr03 36554567 36556485 +
Gso Gso19g1046 Chr19 38174790 38184868 +
Gso Gso3g1034 Chr3 35052017 35061665 +
Lal Lal10g0546 Chr10 13004711 13012962 -
Lapu Lapu1g00313 Chr1 12071600 12074984 +
Lasa Lasa3g02541 Chr3 564801561 564805741 +
Lja Lja1g1462 Chr1 15760446 15765496 -
Phac Phac1g01593 Chr1 23835366 23839183 -
Phco Phco2g01360 Chr2 42498829 42503498 +
Psa Psa3g1966 Chr3 175326128 175327557 +
Pumo Pumo5g02449 Chr5 67601845 67606881 +
Rops Rops8g02635 Chr8 59900897 59913195 -
Seca Seca2g03740 Chr2 115432956 115441351 +
Ssu Ssu4g1639 Chr4 28477271 28482292 -
Sto Sto8g1466 Chr8 9362531 9364304 -
Tpr Tpr6g1313 Chr6 13648751 13655458 +
Tsu Tsu07g03164 Chr07 37588412 37594933 +
Vian Vian2g01784 Chr2 36067849 36074627 +
Vifa Vifa5g02145 Chr5 715184097 715188159 +
Vimu Vimu6g03291 Chr6 29457998 29460603 -
Vivi Vivi6g04454 Chr6 145990464 145994187 -
Pvu Pvu1g1209 Chr1 32690700 32695983 +
Adu Adu06g01888 Chr06 79783784 79808050 -
Aev Aev06g1469 Chr06 10411839 10417904 +
Ahy Ahy16g2029 Chr16 112345693 112366420 -
Ahy Ahy6g1757 Chr6 85261256 85279308 +
Aip Aip06g02207 Chr06 100102582 100130925 -
Amo Amo16g2644 Chr16 116556485 116563823 -
Apr Apr4g1353 Chr4 13119834 13128823 -
Arst Arst6g02449 Chr6 78939930 78962076 -
Bach Bach8g01257 Chr8 8585239 8589046 -
Bva Bva04g02060 Chr04 20226424 20232020 +
Cca Cca07g00524 Chr07 7446584 7459621 -
Dod Dod01g2100 Chr01 57490874 57492915 +
Gma Gma19g01196 Chr19 40654104 40658010 +
Gma Gma03g01133 Chr03 36573570 36579907 +
Gso Gso19g1047 Chr19 38188264 38194612 +
Gso Gso3g1035 Chr3 35092442 35098779 +
Lal Lal8g0939 Chr8 7089205 7100614 -
Lal Lal10g0547 Chr10 13029525 13036285 -
Lasa Lasa3g02542 Chr3 564806951 564810824 +
Phac Phac1g01597 Chr1 23878398 23883700 +
Phco Phco2g01361 Chr2 42509062 42520278 +
Psa Psa3g1922 Chr3 173222747 173223433 -
Pumo Pumo5g02451 Chr5 67655114 67658260 +
Rops Rops8g02636 Chr8 59923900 59935986 -
Seca Seca2g03743 Chr2 115564610 115573933 +
Ssu Ssu4g1638 Chr4 28425757 28432444 -
Tpr Tpr6g1314 Chr6 13657227 13663698 +
Vian Vian2g01785 Chr2 36118145 36131515 +
Vifa Vifa5g02146 Chr5 715189812 715193821 +
Vimu Vimu6g03261 Chr6 29185378 29214858 -
Vivi Vivi6g04452 Chr6 145974142 145977779 -
Pvu Pvu1g1210 Chr1 32700138 32704627 +
Acco Acco02g0987 Chr02 6929075 6932322 +
Accr Accr2g02738 Chr2 63272581 63275690 -
Adu Adu06g01887 Chr06 79761094 79764853 -
Ahy Ahy16g2028 Chr16 112324524 112328377 -
Ahy Ahy6g1740 Chr6 84477341 84481240 -
Aip Aip06g02206 Chr06 100052497 100060060 -
Alju Alju01g0981 Chr01 7289530 7293015 +
Amo Amo06g1912 Chr06 69488700 69492557 -
Apr Apr4g1351 Chr4 13083400 13087406 -
Arst Arst6g02448 Chr6 78917228 78921040 -
Bach Bach8g01256 Chr8 8579090 8582387 -
Bisa Bisa03g2528 Chr03 38220708 38226411 -
Bva Bva04g02061 Chr04 20259754 20262480 +
Car Car03g01977 Chr03 65816511 65820811 +
Cca Cca07g00523 Chr07 7441921 7445894 -
Dere Dere01g2280 Chr01 37009021 37012568 +
Dod Dod01g2101 Chr01 57502516 57507867 +
Enph Enph2g0759 Chr2 5895407 5900594 +
Glsi Glsi12g2296 Chr12 37346286 37350106 +
Gma Gma19g01197 Chr19 40659564 40663457 +
Gma Gma03g01134 Chr03 36582359 36587821 +
Gso Gso19g1048 Chr19 38202837 38207387 +
Gso Gso3g1036 Chr3 35101100 35105418 +
Lal Lal8g0938 Chr8 7073059 7076574 -
Lan Lan10g0814 Chr10 11492049 11495560 +
Lan Lan6g1605 Chr6 23923546 23926522 -
Lapu Lapu1g00312 Chr1 12057047 12061464 -
Lasa Lasa3g02545 Chr3 564850162 564853318 +
Lele Lele05g0767 Chr05 4513259 4516568 +
Lele Lele06g0603 Chr06 3613503 3616870 +
Lele Lele07g0800 Chr07 4588612 4592224 +
Lele Lele08g0606 Chr08 3662674 3666040 +
Lja Lja1g1458 Chr1 15699378 15703927 -
Mibi Mibi02g0888 Chr02 8638818 8641891 +
Phac Phac1g01598 Chr1 23885190 23885585 +
Phco Phco2g01362 Chr2 42524186 42528134 +
Prci Prci1g3440 Chr1 51797525 51801120 -
Psa Psa3g1920 Chr3 173155485 173159373 -
Pste Pste5g01509 Chr5 9626378 9631848 +
Pumo Pumo5g02453 Chr5 67663409 67667638 +
Seca Seca2g03745 Chr2 115655751 115659972 +
Ssu Ssu4g1637 Chr4 28400292 28405009 -
Sto Sto8g1465 Chr8 9358220 9361642 -
Tpr Tpr6g1316 Chr6 13703641 13707618 +
Tsu Tsu07g03166 Chr07 37605594 37609133 +
Vian Vian2g01786 Chr2 36135265 36139285 +
Vifa Vifa5g02148 Chr5 715617787 715620380 +
Vimu Vimu6g03260 Chr6 29176136 29176525 -
Vivi Vivi6g03574 Chr6 129081745 129085360 +