Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1638 atgatttttttaaacttttgttacAGTTTTCTTCGGCTCTACCTCGTTATAGTGGCTTGTCTTGCTTTTCAAGGTTGTAGTTATGCTAACCAGACTTCAACTCTGGTTGTAGATGCTTCTAATTCATCTGGAAGGCCAATTCCTGATACTCtttttggaatattttttgAGGAGATCAATCATGCCGGTGCTGGTGGATTGTGGGCAGAGCTTGTGAACAACAGAGGTTTTGAAGCTGGGGGCACACGAGTACCATCAAATATTGAACCTTGGACTATAGTTGGACAAGAATCAGCCATTTTAATACAAACTGAACTTAGTTCTTGCTTTGAACGCAACAAGGTTGCATTAAAAATGGATGTGCTGTGTGACAATTGCCCTTCTGATGGTGTTGGTGTCTCGAACCCGGGTTTTTGGGGCATGAATATTGTGCAAGGGAAGAAATACAAAGTTATCTTTTTTGTTAGATCAAAAAGACCACTAGATATGACAGTATCATTCAGAAAAACTGAAGATGGAGGGATATTGGCTTCTAGTAATATCAAAGCTTCTACATCAGAAGTTTCAAACTGGAAAAGGATGGAGACTACATTGGAAGCTGATGCATCAAGTTTCAATTCAAGTTTGTATTTAACAACAACCAAAAGAGGGGTGATATGGCTGGACCAAGTGTCTGCtatgcctgtggacacatttaaGGGACATGGTTTCCGAAGTGATTTGGTTAACATGCTATTACAATTGAAACCAGCCTTTTTCAGATTTCCAGGTGGCTGTTTTATTGAAGGACAAACATTAAGAAATGCATTTCGATGGAAAGATAGTGTTGGACCCTGGGAACAGAGACCTGGGCACTTTGGTGATGTTTGGAGTTATTGGACAGATGATGGATTTGGTTATTTTGAGGGTCTTCAACTAGCAGAGGACATTGGTGCAAGGCCAGTGTGGGTATTTAACAACGGCATTAGCCATACTGATGAAATTGATACAAGCGTCATCACACCTTTTGTGCAaGAAGCCCTTGATGGTATTGAGTTTGCAAGAGGTGCAGCTACTTCAAAATGGGgAAACTACCTAGCTTTCTACAAGGCAATACGACATGCTTATCCggatattcaaattatttcaaattgtgATGCTTCTGCCAAACCGTTAGATCACCCAGCCGATATCTATGATTATCATacTTATCCTAATGAAGCTCGAAATATGTTTAATAACTCTCATGTGTTTGATAAGAGTCCACGAAATGGTCCAAAGGCTTTTGTGAGTGAGTATGCTCTAATTGGAGACAAACAAGCAAAGCCTGGAACCCTTTTAGGAGCCATCTCCGAAGCTGGATTCCTTATTGGATTAGAAAGAAACAGTGATCATGTGATAATGGCTAGTTATGCGCCACTTTTTGTAAATGCAAATGACAGGAAgtgGAGCCCAGATGcaattgtttttaattcctatcaGACTTATGGAACTCCTAGCTATTGGGTGCAATTTTTGTTTAGAGAGTCAAAAGGAGCAACATTTCTCAAATCACAACTTCAAACACCTGACCCTAATTCAGTTGCTGCATCTGCAATTTTTTGGCAAAATCCCCAAGATAAAAAAACTTACGTAAAAATAAAGGTTGCTAACCTGGGGAACAACCAAGTAAAATTCAAGATTTCTCTTAACGGATTTGAGAGCTCAAATCTAACTAAAGCAACAAAGATAGTTCTCACATCTGCAAATGCATTAGATGAGAATAGTTTCGCAAACCCAAAAAAGGTAGTACCAAAGCGAAGTCCACTTCAGAGTCATGGCAACGAGATATATGACATACTTCCTCCAGTTTCACTGACagtatttgatttattaaaaaatcaatga 1866 0.3719 MIFLNFCYSFLRLYLVIVACLAFQGCSYANQTSTLVVDASNSSGRPIPDTLFGIFFEEINHAGAGGLWAELVNNRGFEAGGTRVPSNIEPWTIVGQESAILIQTELSSCFERNKVALKMDVLCDNCPSDGVGVSNPGFWGMNIVQGKKYKVIFFVRSKRPLDMTVSFRKTEDGGILASSNIKASTSEVSNWKRMETTLEADASSFNSSLYLTTTKRGVIWLDQVSAMPVDTFKGHGFRSDLVNMLLQLKPAFFRFPGGCFIEGQTLRNAFRWKDSVGPWEQRPGHFGDVWSYWTDDGFGYFEGLQLAEDIGARPVWVFNNGISHTDEIDTSVITPFVQEALDGIEFARGAATSKWGNYLAFYKAIRHAYPDIQIISNCDASAKPLDHPADIYDYHTYPNEARNMFNNSHVFDKSPRNGPKAFVSEYALIGDKQAKPGTLLGAISEAGFLIGLERNSDHVIMASYAPLFVNANDRKWSPDAIVFNSYQTYGTPSYWVQFLFRESKGATFLKSQLQTPDPNSVAASAIFWQNPQDKKTYVKIKVANLGNNQVKFKISLNGFESSNLTKATKIVLTSANALDENSFANPKKVVPKRSPLQSHGNEIYDILPPVSLTVFDLLKNQ 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1638 621 Gene3D - 68 221 - -
Ssu4g1638 621 Gene3D Glycosidases 359 501 - -
Ssu4g1638 621 Gene3D - 502 617 IPR013780 -
Ssu4g1638 621 SUPERFAMILY Glycosyl hydrolase domain 491 616 - -
Ssu4g1638 621 Gene3D Glycosidases 222 358 - -
Ssu4g1638 621 SUPERFAMILY (Trans)glycosidases 208 508 IPR017853 -
Ssu4g1638 621 SMART alpha_l_af_c 424 611 IPR010720 GO:0046373|GO:0046556
Ssu4g1638 621 PANTHER ALPHA-L-ARABINOFURANOSIDASE 1 1 356 - -
Ssu4g1638 621 PANTHER ALPHA-L-ARABINOFURANOSIDASE 1 356 619 - -
Ssu4g1638 621 SUPERFAMILY Galactose-binding domain-like 70 225 IPR008979 -
Ssu4g1638 621 PANTHER ALPHA-L-ARABINOFURANOSIDASE-LIKE PROTEIN 1 356 - -
Ssu4g1638 621 PANTHER ALPHA-L-ARABINOFURANOSIDASE-LIKE PROTEIN 356 619 - -
Ssu4g1638 621 Pfam Alpha-L-arabinofuranosidase C-terminal domain 425 604 IPR010720 GO:0046373|GO:0046556
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1638 Ssu-Chr4 28425757 28432444 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1638 9 619 Glycoside Hydrolase AT3G10740 57.362 0.0 751
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1638 K01209 - gmx:100780771 1082.4