Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01196 ATGGCTGGACCAAGTGTCTGCAATGCCTGGGGACACATATCAGGTGGCTGTTTTATTGAAGGACAAACATTAAGAAATGCATTTCGGTGGAAAGATAGAGTTGGACCCTGGGAACAGAGACCTGGGCACTTTGGTGATGTTTGGAGCTATTGGACAGATGAAGGATTTGGTTATTTTGAGGGTCTTCAACTAGCAGAGGACATTGGTGCAAGGCCATTGTGGGTATTTAACAACGTTGATACAAACATCATCACACCTTTTGTGCAAGAAGCCCTTGATGGTATTGAGTTTGCCAGAGATGAGGCTACTTCTAGATGGGGTTCCCTTAGAGCATCTATGGGGCACCCAAAGCCTTTTGACCTAAAAAATGTTGCTATTGGAAATGAAGATTGTGGAAAGACAAACTACCAAGGCATGCTCTCTCCTTTCTACAAGACAATACGACATGCGAATCCGGATATCCAAATTATTTCCAAACCATTAGATCACCCAGCCGATATGTATGATTACCACGCAATATCCTATCTCTTACAATTAACATTCACTTATCCTCATGAAGCTATAAAAATGTTTAATAACGCTCATGTGTTTGATAAGACACCACGAAATGACCCAAAGTATGCTCCAATTGGAGACATACAAGCTAAGCATGGAACCCTTTTGGGAGCTGTGTCCGAAGCTGGATTCCTTATTGGATTAGAAAGAAACAGTGATCATGTGATAATGGCTAGCTATACGCCACTTTTTGTAAATGCAAATGACAGGATGTGGAACCGGGATGCAATTGTTTTTAATTCCAATCATGTATATGGAACTCCTAGCTATTGGGTGCAGTTTATGTTTAGAGAGTCAAATGGAGCAACATTTCTAAAATCACAACTTCAAACGCCTGACTCTGATTCAGTTCCTGCATCTGCAATTCTTTGGATAAATCCCCAAGATAAAAAAACTTACTTAAAAATAAAGGTTGCAAACGTGGGGAACAACCAAATAAATTTTAAGATTTCCCTAAATGGATTTGAGAGCTCAAATGCAACTAAGGCAACAAAGACAATGCTCACATCTGAAAATGCATTAGATGAGAATAGCTTCGCAAATCCCAAAGAGATAGTACCAAAGCGAAATCCACTTCAGAGTGCTAGACATACTTCCTCCAGTTTCATTGACACTATTTGA 1176 0.3997 MAGPSVCNAWGHISGGCFIEGQTLRNAFRWKDRVGPWEQRPGHFGDVWSYWTDEGFGYFEGLQLAEDIGARPLWVFNNVDTNIITPFVQEALDGIEFARDEATSRWGSLRASMGHPKPFDLKNVAIGNEDCGKTNYQGMLSPFYKTIRHANPDIQIISKPLDHPADMYDYHAISYLLQLTFTYPHEAIKMFNNAHVFDKTPRNDPKYAPIGDIQAKHGTLLGAVSEAGFLIGLERNSDHVIMASYTPLFVNANDRMWNRDAIVFNSNHVYGTPSYWVQFMFRESNGATFLKSQLQTPDSDSVPASAILWINPQDKKTYLKIKVANVGNNQINFKISLNGFESSNATKATKTMLTSENALDENSFANPKEIVPKRNPLQSARHTSSSFIDTI 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01196 391 Pfam Alpha-L-arabinofuranosidase C-terminal domain 212 381 IPR010720 GO:0046373|GO:0046556
Gma19g01196 391 Gene3D - 282 387 IPR013780 -
Gma19g01196 391 Gene3D Glycosidases 12 281 - -
Gma19g01196 391 SUPERFAMILY (Trans)glycosidases 15 289 IPR017853 -
Gma19g01196 391 PANTHER ALPHA-L-ARABINOFURANOSIDASE 1 13 388 - -
Gma19g01196 391 SMART alpha_l_af_c 207 383 IPR010720 GO:0046373|GO:0046556
Gma19g01196 391 PANTHER ALPHA-L-ARABINOFURANOSIDASE-LIKE PROTEIN 13 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01196 Gma-Chr19 40654104 40658010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01196 15 382 Glycoside Hydrolase AT3G10740 54.897 3.51e-137 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01196 K01209 - gmx:100780771 643.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01196 19 40654104 40658010 Gma03g01133 03 36573570 36579907 GST