Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1027 ATGTCCCTTCCTATTAAGATTTGTCTTCTTTACTTGACCTGCCTCACAGTTTCCTGCTTTGCAGAGCAAACTTCAACCTTAATTGTAGATGCTAAAGGATCTGTGAGAAAAATTCCAGATACTTTCTTTGGAGCATTTTTTGAGGAAATCAATCATGCAGGAGCTGGGGGATTGTGGGCTGAGCTTGTGAGGAATAGAGGTTTTGAAGCTGGAGGCCCCAACGTTCCCTCAAATATTTTTCCGTGGTCAATTATTGGAGATGATTCAACCATCCTTGTCTCAACTGATCGTACCTCTTGCTTTGAGCGAAATAAAGTCGCATTGCGTATGAACATTCTTTGTAATGAATCTAATCCTTGCCCAGCTGGTGGTGTTGGTATCTCAAATCCTGGTTTCTGGGGCATGAATATTGAGAAAGGGCAGAAGTACAAAGTAGTCTTCTATGTGAAAGCACGTGGTAGACTTGATCTAGACGTTTCATTTGTTGGATCGGTTAGTGGTGCAAAGTTGGCTTCACAAAACTTTAGAGCTCCTGGACATAATATTTCAATGTGGACAAGGATGGAGACTATACTGGAAGCCAATGATACAAATCGTAATGCAAGTCTTCAAATAACAACAAGCAATAGAGGAGTTGTATGGTTAGACCAAGTGTCTGCTATGCCCTTAGACACATTTAAGGGTCATGGTTATCGAAAGGACCTTTTTCAAATGGTGGCAGATTTGAAACCAAATTTTTTCAGATTTCCGGGTGGGTGTTATGTTGAAGGAAATTATCTAAGAAATGCATTTAGGTGGAAAGACACGGTTGGACCCTGGGAAGAGAGACCAGGGCACTTTAATGATGTATGGAATTATTGGACTGACGATGGATTTGGTTTTTTTGAGGGCCTCCAATTCGCTGAGGATGTTGGTGCATTGCCAACGTGGGTGTTTAACAATGGTCTCAGCCTTAACGACGAAGTTAATACATCTGCCATCGCGCCTTTTATCCAAGAAGCTCTAGACGGAATCGAGTTTGCTAGAGGTTCTCCAAAATCACAATGGGGATCTCTTAGGGCTTCCATGGGACATCCTGAGCCATTTGACTTGAGAATTGTTGCCATTGGAAATGAAGAGTGTGGCATGCCTAAGTATCAAGCGAACTATCTCAAATTTCACGCTGCCATAAAACAAGCTTATCCAGATATTCAGATCATAACCAATTGTGATGGTTCTAAAAAACCATTAGATCATCCAGCTGATCTCTATGATTTTCATATTTATACAAATGCTACGGACATGTTTTCAAAGTCTACCAAGTTCGATGATGCACCACGATCTGGTCCAAAGGCGTTTGTTAGCGAGTATGCTGTTTGGAAGGATGATGCTGGAAATGGAACTCTTTTGGCTGCCGTGGCTGAAGCTGCATTCCTTATTGGACTAGAAAGAAATAGTGATGTCGTTCACATGGTCAGTTATGCGCCACTCTTTGTAAACACAAATGATAGAAAGTGGACACCGGATGCAATTGTATTTGACTCTCATCAGCATTATGGAACTCCTAGTTATTGGGTTCAACATCTTTTTACTACTTCAAGTGGAGCCACTTTGCTTAATACAACACTTCAAACTTCTACCGACTCCCTTGTTGCATCAGCAATTGAATACACAAACCCTAAGGATAAGAAGAACTACTTGAGAATAAAGGTTGTAAACTTTGGAAGTGATCAACAGAACTTGAGATTTTCTATAAGTGGACTGACTTCAAATGTGCAGCAATCTGGAGCAGCAAAGACAGTGCTCACGGGGCCTAATGTAAAAGAAGAGAATTCCTTCTCAGAACCAAATAAGATTGCGCCACAACACTCTTCACTTGAGGATGCTAGTGGGGACATGAACGTTGTACTTGCTCCATATTCTGTTACATCATTTGATCTATTAAAGTAG 1929 0.4111 MSLPIKICLLYLTCLTVSCFAEQTSTLIVDAKGSVRKIPDTFFGAFFEEINHAGAGGLWAELVRNRGFEAGGPNVPSNIFPWSIIGDDSTILVSTDRTSCFERNKVALRMNILCNESNPCPAGGVGISNPGFWGMNIEKGQKYKVVFYVKARGRLDLDVSFVGSVSGAKLASQNFRAPGHNISMWTRMETILEANDTNRNASLQITTSNRGVVWLDQVSAMPLDTFKGHGYRKDLFQMVADLKPNFFRFPGGCYVEGNYLRNAFRWKDTVGPWEERPGHFNDVWNYWTDDGFGFFEGLQFAEDVGALPTWVFNNGLSLNDEVNTSAIAPFIQEALDGIEFARGSPKSQWGSLRASMGHPEPFDLRIVAIGNEECGMPKYQANYLKFHAAIKQAYPDIQIITNCDGSKKPLDHPADLYDFHIYTNATDMFSKSTKFDDAPRSGPKAFVSEYAVWKDDAGNGTLLAAVAEAAFLIGLERNSDVVHMVSYAPLFVNTNDRKWTPDAIVFDSHQHYGTPSYWVQHLFTTSSGATLLNTTLQTSTDSLVASAIEYTNPKDKKNYLRIKVVNFGSDQQNLRFSISGLTSNVQQSGAAKTVLTGPNVKEENSFSEPNKIAPQHSSLEDASGDMNVVLAPYSVTSFDLLK* 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1027 642 Pfam Alpha-L-arabinofuranosidase C-terminal domain 449 634 IPR010720 GO:0046373|GO:0046556
Gso19g1027 642 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Gso19g1027 642 PANTHER ALPHA-L-ARABINOFURANOSIDASE-LIKE PROTEIN 7 641 - -
Gso19g1027 642 MobiDBLite consensus disorder prediction 598 618 - -
Gso19g1027 642 SMART alpha_l_af_c 448 634 IPR010720 GO:0046373|GO:0046556
Gso19g1027 642 Gene3D - 59 215 - -
Gso19g1027 642 Gene3D Glycosidases 216 523 - -
Gso19g1027 642 SUPERFAMILY Glycosyl hydrolase domain 514 638 - -
Gso19g1027 642 PANTHER ALPHA-L-ARABINOFURANOSIDASE 1 7 641 - -
Gso19g1027 642 SUPERFAMILY (Trans)glycosidases 202 534 IPR017853 -
Gso19g1027 642 Gene3D - 524 640 IPR013780 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1027 Gso-Chr19 37938221 37941932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1027 7 642 Glycoside Hydrolase AT3G10740 62.366 0.0 848
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1027 K01209 - gmx:100802745 1319.29