Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03560 ATGGAAATAGGAGCTTGCAAAGGAGAAATGACAAAAAAAGACTTGAGAAAGAAAGAAAGAGAAGAGATAGATAACCCAAATGTTCTACTTTATTCCTCCCACTTGCCTGAAAACAAACTAATCAGAGTTAAAGCTGGTAAGGGGTCTCCAAGGACAATTCCTGACACTTTCCTCGGAGTATTCGTCGAGGAGATTAATCATGCTTGTGCTGGGGGACTGTGGGCAGAACTTGTTAGCAATAGAGTGATTGGAAATGAATCATCCATTTCTGTTTCAATTAACTCTACCTCATGTTTTGAGCGTAATAAAGCTGCATTAAACATGGAGGTTCATTGTGGTGATCACAACCCTTGCCCAGTTGGTGGCGTTGGTGTCTCTAACCCTGGTTATTGGGGCATGAATATCGAGGAAGGGAAATTGTACAAGGTGGTGTATCATGTTAAATCAGAAGGAAATGTTGATTTTCAACTTTCATTCGCGGGTGTTGATGTCATAAAGGTGGCATCAAATATCACACAAGTTTCTGGGCAAAACCAATGGAAAAGGGTGGAGACATTGTTGAAAGCAAATGCTACTAATCACAGTTCAAGTCTTCAAATCACCACAACCACTAACGGAATAGGACCATGGGAGGAGAGACCTGGGCACTTCAATGATATTTGGAACTATTGGAGTGAAGATGGAATTGGTTATTTTGAGTATCTCCAACTAGCAGAGGACCTTGGTGCATTGCCCATATGGGTGTTCAACGCTGGTATCAGCCGTTATGAACAAATTAAAACTTCAAACCTAGCACCTTATGTGCAAGATGCTCTAGATGGCATTGAATTTGCAAGAGGCTCTTCTAAATCAAAGTGGGGTTCTCTTAGAGCTAGATTGGGACATCCTAACCCATTTGATTTGAGATACGTTGCCGTTGGAAACGAAGATTGTGAATTTTCAAATTATCAAGCAAATTACGTTACGTTCCATGATGCTATAAGACACGCCTACCCAGATATCAAAATCATCTCAAATTGTGATGCTTCAAACACCCCATTAAACCATTCAGCCGATTTGTTCGATTTTCATATTTATACAAACTCCGGTGACCTGTTTTCCAAGTCTACTCAGTTCGAGAAAACATCGCGATCTGGTCCAAAGGCTTTTGTGAGTGAGTATGCTGTGTGGAGAGAAGATGCTGCAAATGGAAGTCTTGTGGCTGCTGTGGCTGAAGCTGCATTTCTTATTGGATTGGAAAAGAACAGTGATGTTGTCGACATGGTTTCCTATGCACCGCTTTTCTCAAATATAAACGACAGGAAATGGATTCCCGATGCAATTGTGTTCAACTCTTATCAGCTCTATGGAACTCCTAGCTATTGGGTGCAGAAGCTTTTTATTGAGTCCAGTGGTGCAACGTATCTTAATTCATCACTCCTTACAACTTCTTCTTCTAATAAACTAATTGCATCTGGAATTAGTTGGCAAAATTCTACAGATAAGAAAAATTACCTAAGAATAAAGGTAGTAAACTTTGGAGCAGCCACAGAGGAACTTAACATACTCATAGATGGGTTCCCAAAAGAGCAGAAGTTTGGTTTTACAAAGACAGTGCTTACATCCACCAACAAAATGGATGAGAATTCCTTCTCAGAGCCTACGAAGGTGGTGCCACAAACAAGTTGGGTAGAGAATGTTTCCAAGGAGATAAATGCAACTCTCTCTCCCTATTCGGTGACATCATTTGATTTGTTAATTTATTAG 1746 0.4038 MEIGACKGEMTKKDLRKKEREEIDNPNVLLYSSHLPENKLIRVKAGKGSPRTIPDTFLGVFVEEINHACAGGLWAELVSNRVIGNESSISVSINSTSCFERNKAALNMEVHCGDHNPCPVGGVGVSNPGYWGMNIEEGKLYKVVYHVKSEGNVDFQLSFAGVDVIKVASNITQVSGQNQWKRVETLLKANATNHSSSLQITTTTNGIGPWEERPGHFNDIWNYWSEDGIGYFEYLQLAEDLGALPIWVFNAGISRYEQIKTSNLAPYVQDALDGIEFARGSSKSKWGSLRARLGHPNPFDLRYVAVGNEDCEFSNYQANYVTFHDAIRHAYPDIKIISNCDASNTPLNHSADLFDFHIYTNSGDLFSKSTQFEKTSRSGPKAFVSEYAVWREDAANGSLVAAVAEAAFLIGLEKNSDVVDMVSYAPLFSNINDRKWIPDAIVFNSYQLYGTPSYWVQKLFIESSGATYLNSSLLTTSSSNKLIASGISWQNSTDKKNYLRIKVVNFGAATEELNILIDGFPKEQKFGFTKTVLTSTNKMDENSFSEPTKVVPQTSWVENVSKEINATLSPYSVTSFDLLIY 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03560 581 SMART alpha_l_af_c 385 572 IPR010720 GO:0046373|GO:0046556
Spst1g03560 581 Pfam Alpha-L-arabinofuranosidase C-terminal domain 386 572 IPR010720 GO:0046373|GO:0046556
Spst1g03560 581 Gene3D Glycosidases 193 460 - -
Spst1g03560 581 PANTHER ALPHA-L-ARABINOFURANOSIDASE 1 205 579 - -
Spst1g03560 581 SUPERFAMILY (Trans)glycosidases 205 468 IPR017853 -
Spst1g03560 581 Gene3D - 461 578 IPR013780 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03560 Spst-Chr1 44852258 44861429 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03560 3 579 Glycoside Hydrolase AT3G10740 49.772 0.0 619
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03560 K01209 - sly:101258907 608.986