Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1642 ATGGGTTCATCCAGAGCCTCACGCAGTGTTTCTCTGCTCCAATTGTTCATAGTGGTTTGCCTTGTCTTCCAATGCTTTGCTATAAAGAGATCAATCATGCTGGAGCTGGGGGATTGCGGGCTGAGCTTGAGAGCAACAGAGTTGATTTTCATATTCTCTAAACTTTTAAATGACAAAACAGGCACTAGAAGGGGTTCTGCACTTGATTATTCAAACTGGACAAAGGTGGAGACTGTATTGGTTGCCAAGGCAACAAATCAATGGTTGGACCAAGTGTCCGCTATGCCACTGGACACATATAAGGGACACGGTTTCTGTAGTGAACTTGTCGAAATGCTGGCAGatttgaaaccaaaatttatCAGATTTCCGGGAAACTACCTGAAATTCTTTAGTGCAATAAGAAGTGCTTATCCAGATATccaaattatttcaaattgtgATGGTTCTTCTCGACCTTTAGATCATCCAGCTGATATGTATGATTATCATGCTTTTGTAAGTGAGTATGCTGTGACAGGAAAAGATGCTGGGACAGGAAGCGTTTTGGCCGCCCTAGCTGACGCTGGGTTCCTTATTGGACAGGAAAAGAACAGGTTTACTGAGACTTCTTATGAAGTTTTCATTAAGTATTTTATCCAGGGTCAGGCTTGA 654 0.4067 MGSSRASRSVSLLQLFIVVCLVFQCFAIKRSIMLELGDCGLSLRATELIFIFSKLLNDKTGTRRGSALDYSNWTKVETVLVAKATNQWLDQVSAMPLDTYKGHGFCSELVEMLADLKPKFIRFPGNYLKFFSAIRSAYPDIQIISNCDGSSRPLDHPADMYDYHAFVSEYAVTGKDAGTGSVLAALADAGFLIGQEKNRFTETSYEVFIKYFIQGQA 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1642 217 PANTHER ALPHA-L-ARABINOFURANOSIDASE 1 125 198 - -
Ssu4g1642 217 PANTHER ALPHA-L-ARABINOFURANOSIDASE 1 64 125 - -
Ssu4g1642 217 SUPERFAMILY (Trans)glycosidases 87 125 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1642 Ssu-Chr4 28621193 28628209 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1642 123 198 Glycoside Hydrolase AT3G10740 60.000 1.48e-31 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1642 K01209 - gmx:100806458 132.88