Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03304 ATGAGAGAAAAGATGACTATGATGAAGATATTTCTTATCTACTTGAGCTGCTTCGTACTATGCTGTTATGCAAAGGAAAGGTCAACAACATTGCACATAAATGGGACGGAAGGAGCTGGGAGAAAAATTCCAGATACATTCTTCGGAGCATTTTTTGAGGAAATAAACCATGCAGGAGCTGGGGGATTGTGGGCGGAGCTTGTTCGAAACCGAGGTTTCGAAGAAGGAGGGTCAAGTGTTCCATCAAATATATTTCCATGGACAATGGTGGGAGATGATTCAACCATACACATCTCAACTGATCGTAGCTCTTGCTTCGATCGAAACAAAGTTGCATTGCGTATGGATGTTCTCTGTGATGGACCCAAATCTTGCCCACCTGATGGTGTTGGCATCTCAAATCCTGGTTTCTGGGGCATGAATATTGAGAAAGCACACAAGTATAAAGTAGTGTTCTTTACCAAAGCAAGTGGTGCGGTTGATCTTCAAGTCTCGTTTGTTGGATCAGATAATACCGAGTTGGCATCAAACAGCATTGGGTCTTTCGGTGAGAATGTTACAGAGTGGAAGAGGATGGAGACCGTACTGGAAGCGAAGGCAACTGACCACAATGCAAGTCTCCAAATAACGACAAGCAAGAAAGGAGTTTTATGGTTAGATCAAGTTTCAGCAATGCCAGTAGACACGTACAAGGGTCATGGATTCCGAAAGGACCTTGCTCAGAGGGTGGCCGATTTGAAGCCTAAATTTTTCAGATTTCCTGGTGGATGTTACGTTGAAGGAGGTTATATGAGAAACGCATTCAGATGGAAAGACAGCGTGGGAGCATGGGAGGAGAGACCTGGTCACTTCGGAGACGTTTGGGGTTATTGGACCGATGATGGTTTTGGCTATTTTGAAGGCCTTCAATTCTCTGAGGATATCGGTGCATTGCCAGTGTGGGTGTTTAACGATGGTCTCAGCCTTACTGACGAAGTGGATACTTCTATGATCGGACCTTTTATTCAAGAAGCTCTGGATGGACTTGAGTTTGCAAAGGGTTCGGCAAAGTCAAAATGGGGATCTCTAAGGGCTTCCATGGGACATCCCGACCCATTCGATCTCAGAATTGTTGCCATTGGAAACGAAGAGTGCGCCATGTCTAAGTATAGAGGAAACTACCTCAAATTTTATGATGCCATCAAGCAAGCTTATCCAGATATTCAGATTATCTCTAACTGCGATGCTTCTCAAAAACCTTTGGATCATCCAGCTGATTTCTACGATTTTCATATTTATACAAATGCCGACGACATGTTTTCGAAGCATACGAAATTCGATGACGCACCACGATACGGTCCAAAGGCGTTTGTGAGTGAGTATGCAGTTTGGCGATCGGACGCTGGGAATGGAACTCTTCTTGCTGCCGTGGCTGAAGCTGCATTCCTTATTGGATTGGAAAAGAATAGTTCAAGTGGAGCAACTTTGCTATATTCAAATCTTGAAAGCAGTTCCGATAAGATAGTTGCATCAGCAATCGAATTCACAAATCCTTCAGATAATAAAAAGTATTTGAGAATTAAAGTTGTAAACTTTGACAGTGTTCCACACAAGTTTAGGTTTTGTATCGATTTGAAGGTAAAAGGATATGGAGCAACCAAAACAGTGATAACAGGGCCTAACGTTAAAGAAGAAAATTCCTTTTCAGAACCAAACAGGATTATTCCACAACACGCTTCTCTCCAGAACCCTTCTTCAGACATGACTCTCATTCTTCCTCCTTACTCCTTTTCTTCCTTTGATCTCTTCATTTAA 1794 0.427 MREKMTMMKIFLIYLSCFVLCCYAKERSTTLHINGTEGAGRKIPDTFFGAFFEEINHAGAGGLWAELVRNRGFEEGGSSVPSNIFPWTMVGDDSTIHISTDRSSCFDRNKVALRMDVLCDGPKSCPPDGVGISNPGFWGMNIEKAHKYKVVFFTKASGAVDLQVSFVGSDNTELASNSIGSFGENVTEWKRMETVLEAKATDHNASLQITTSKKGVLWLDQVSAMPVDTYKGHGFRKDLAQRVADLKPKFFRFPGGCYVEGGYMRNAFRWKDSVGAWEERPGHFGDVWGYWTDDGFGYFEGLQFSEDIGALPVWVFNDGLSLTDEVDTSMIGPFIQEALDGLEFAKGSAKSKWGSLRASMGHPDPFDLRIVAIGNEECAMSKYRGNYLKFYDAIKQAYPDIQIISNCDASQKPLDHPADFYDFHIYTNADDMFSKHTKFDDAPRYGPKAFVSEYAVWRSDAGNGTLLAAVAEAAFLIGLEKNSSSGATLLYSNLESSSDKIVASAIEFTNPSDNKKYLRIKVVNFDSVPHKFRFCIDLKVKGYGATKTVITGPNVKEENSFSEPNRIIPQHASLQNPSSDMTLILPPYSFSSFDLFI 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03304 597 FunFam Alpha-L-arabinofuranosidase 1 222 510 - -
Vimu6g03304 597 Gene3D - 504 596 IPR013780 -
Vimu6g03304 597 Gene3D - 82 219 - -
Vimu6g03304 597 PANTHER ALPHA-L-ARABINOFURANOSIDASE 1 484 595 - -
Vimu6g03304 597 SMART alpha_l_af_c 452 589 IPR010720 GO:0046373|GO:0046556
Vimu6g03304 597 SUPERFAMILY Galactose-binding domain-like 66 224 IPR008979 -
Vimu6g03304 597 Gene3D Glycosidases 220 503 - -
Vimu6g03304 597 SUPERFAMILY (Trans)glycosidases 207 490 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03304 Vimu-Chr6 29565756 29568361 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03304 28 596 Glycoside Hydrolase AT3G10740 56.613 0.0 726
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03304 K01209 - gmx:100802745 887.486
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03304 6 29565756 29568361 Vimu6g03304 6 29565756 29568361 ECH