Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03561 ATGGATGAGAATTCCTTCTTAGAGCCCAAGAAGGTGGTGCCACAAACAAGTTCACTAGAGAAGGCTGACAATTTTCTTTGGATCTACCTCGTTATAGGGGCTTGTTTTGCTTTTCAAGGTTGCGCTTATGCCAACAAGACTTCAACTCTGGTTGTAGATGCTACTGATTTATCTGGAAGGCCAATTCCCGACACTCTTTTCGGAATTTTTTTTGAGGAGATCAATCATGCTGGTGCTGGTGGATTGTGGGCAGAGCTTGTGAATAACAGAGGTTTTGAAGCTGGGGGCAGACAAGTTCCATCAAATATTTCACCCTGGACCATAGTTGGGAAAGAACCAGCTATTTTCCTACAAACTGAACTTAATTCTTGCTTTGAAGACAACAAGGTTGCATTAAAAATGGATGTGCTGTGTGACGATTGCTATTCTGATGGTGTTGGAGTCTCTAACCCGGGTTTTTGGGGCATGAATATTGTGAAAGGGAAGAAATATAAAGTTGTGTTCTTTGTTAAATCAAAAGGATCACTACATATGACAGTATCGTTCAGAAAAACTGAAGGTGGAAGGGTATTGGCTTCAAGCAATGTCAAGTCTTCTGCATCAGAAGTTTCCAAATGGAAAAGGATGGAGACTACATTAGAAGCTCATGCATCATGTTCGAAATCCAGTTTGTATCTGACAACAACAAAAAAAGGGGTGATATGGTTGGACCAAGTGTCTGCTATGCCTGTGGACACATATAAGAGACCTGGCCACTTTGGTGATGTTTGGAGTTATTGGACAGATGATGGATTTGGTTATTTTGAGGGTCTTCAACTAGCAGAGGACATTGGTGCAAGGCCATTGTGGGTATTTAACAGTGGCATCAGCCATACTGATGAAATTGACACACATGTCATCTCACCTTTTGTGCAAGAAGCCCTTGATGGTATTGAGTTTGCCAGAGGAGCAGCTACGTCAAAATGGGGTTCCCTTAGAGCATCTATGGGGCACCTAAAGCCTTTTGATCTAAAATATGTTGCTGTTGGAAATGAAGATTTTTCACTTCAGACTTATCCTACGGAACATGAGATTATGTTTAATAATGCTCATGTGTTTGATAAGACACCACGAAATGGTCCAAAGGCTTTTGTGAGTGAGTATGCTCTAACTGGAAAGAAACAGGCTAAGCATGGAACCCTTTTGGGAGGTGTGTCCGAAGCTGGATTCCTTATTGGATTAGAAAGAAACAGTGATCATGTGATAATGGCTAGCTATGCACCACTTTTTGTAAATGCAAATGACAGGAAGTGGAACCCAGATGCCATTATTTTTAATTCCAATCAGGTTTATGGAACTCCTAGCTATTGGGTGCAGTTTATGTTCAGAGAGTCAAATGGAGCAACATTTCTCAAGTCACAACTTCAAACACCTCACCCTAATTCAGTTGCTGCATCTGCAATTCTTTGGAAAAATTCCCATGACAAAAGAACTTATTTGAAAATAAAGGTTGCAAACGTGGGGAAGAACCAAATAAATCTGAAGATTTATGTAAAGGGAATTCAGAGTTCAAATGCAACCAAGGCAACAAAGACAGTGCTCACATCTGCAAATGCTTTGGATGAGAATAGCTTTGCAGACCCAAAAAAGTCCTCTTCTCGATGTGACGTCGTTTCACGTCTCACCTTCCCCAGAATCACCACCACTACCATCCCCACTCGCTGA 1704 0.4131 MDENSFLEPKKVVPQTSSLEKADNFLWIYLVIGACFAFQGCAYANKTSTLVVDATDLSGRPIPDTLFGIFFEEINHAGAGGLWAELVNNRGFEAGGRQVPSNISPWTIVGKEPAIFLQTELNSCFEDNKVALKMDVLCDDCYSDGVGVSNPGFWGMNIVKGKKYKVVFFVKSKGSLHMTVSFRKTEGGRVLASSNVKSSASEVSKWKRMETTLEAHASCSKSSLYLTTTKKGVIWLDQVSAMPVDTYKRPGHFGDVWSYWTDDGFGYFEGLQLAEDIGARPLWVFNSGISHTDEIDTHVISPFVQEALDGIEFARGAATSKWGSLRASMGHLKPFDLKYVAVGNEDFSLQTYPTEHEIMFNNAHVFDKTPRNGPKAFVSEYALTGKKQAKHGTLLGGVSEAGFLIGLERNSDHVIMASYAPLFVNANDRKWNPDAIIFNSNQVYGTPSYWVQFMFRESNGATFLKSQLQTPHPNSVAASAILWKNSHDKRTYLKIKVANVGKNQINLKIYVKGIQSSNATKATKTVLTSANALDENSFADPKKSSSRCDVVSRLTFPRITTTTIPTR 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03561 567 Gene3D Glycosidases 237 367 - -
Spst1g03561 567 PANTHER ALPHA-L-ARABINOFURANOSIDASE 1 31 248 - -
Spst1g03561 567 Gene3D - 83 236 - -
Spst1g03561 567 SMART alpha_l_af_c 379 560 IPR010720 GO:0046373|GO:0046556
Spst1g03561 567 Pfam Alpha-L-arabinofuranosidase C-terminal domain 380 546 IPR010720 GO:0046373|GO:0046556
Spst1g03561 567 SUPERFAMILY (Trans)glycosidases 220 463 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03561 Spst-Chr1 44877522 44885188 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03561 30 543 Glycoside Hydrolase AT3G10740 51.303 0.0 597
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03561 K01209 - gmx:100780771 805.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03561 1 44877522 44885188 Spst1g03561 1 44877522 44885188 ECH