Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00544 ATGCAGTGTTTCTCTGCTCCAATTGTTCATAGTGAGACACTTTTTGGCATATTCTTTGAGGAGATCAATCATGCTGGAGCCGGGGGAATTTGGGCTGAGCTTGTGAGCAACAGAGGATTTGAAGCTGGGGGCCCTAACACTCCTTCAAATATTGATCCTTGGTCAGTTATTGGAAATGGATCACTGATAAATGTTGAAACTGATCGTACCTCTTTCTTTGACCGTAATAAGGTTGCACTTCGATTGGAGGTGTTATGTGACAGCAAAGGTGACAACATCTGCCCAGCTGATGGTGTTGGTGTTTATAACCCTGGTTTCTGGGGCATGAATATTGAGCAAGGGAAGAAATACAAAGTGGTCTTCTATGTTCGTTCAACTGAATCACTTAATCTAACAGTTTCATTGACTGGATCAAATGGTGTAGGAAATCTGGCTTCATCTGTGATTACGGGTTCTGCACTTCATTTTTCTAACTGGACAAAGGTGGAGACTTTATTGGTTGCCAAAGAAACGAATCGTAACTCAAGACTTCAATTAACCACTACCACCAAAGGTGTGATATGGTTGGACCAAGTGTCTGCTATGCCACTGGACACATATAAGGGACATGGTTTCCGCAGTGAACTTGTTGAAATGCTGGCAGATTTGAAACCAAAATTTATCAGATTTCCGGGTATGACCGCCTTAAGGAACCCTAAGGACCATCCGCCAGATCCAACGATTATGCGTGCATGGCCACATTCGATTGATCAGGAACCTACCAAAGGGATTGTGTTGGAAGGGTGTTTGGCTTCTAAGTTGGGTGAGAATCCCAACAAAAGCACCGAGATGGAGATGGCGAGTTCTTCGGATGAAGAGATGGATGAAGAGATCCATATAGAGCCACAGGGTTACAAGATGGTCTCGGCAGAAGAAGCGAATGGGCACTCAGGGGGGATTTGGGTACTTGTGAAGAAAGGGATAGAAGATATTGTGGAATGTGTAGACACCATGCCTCAGTGTGTTACTCTGAAGCTCTCTCGTGGAAACTCACTCTTCTTATCCAAGAAGAAGTTAGGTTCACCAACTTGGAGGGCCATCATTCAGGCGTTGGCTCTTTTGGAAGATGGTCTAGTTCTCAAGTTGGGCAATGGAGAGATCGATGTTTGGCAGGATGTATGGGTGGGTAAGGAACCACTAGCGACGTCTGTCCCGTGGGTGGATATTCACGATTCTGGGTTGCGAGTCAAAGATATTTGGGATGGCACCTCATGGCGGCTGGACCAGCTTTACACACATTTTTCTGAGACTTTTCGTCTCAAGATATCTTGTTTAACTCCGCATCTTGTCGTAGGTGTGCCAGACTTGTGGACTTGGGCACCTGATATCTTTGGGAAGTACACGGTACGATCAGCTTACAGGTGGCTAATAGAGGATCATGGGTTGGAAACCTCTGCAGGTTGGAATTGGATTTGGAAGTTGTCACTTCCAGCTAGTTTGTGTTTCTTTCTTTGGCAGAGTTGTCATCTGGCTCTACCTATTAAGGAGGTTCTTTGTCAACGTGGCATCTTGGCTTCCAATACCTGCCCTAAGTGTAACTCTGCCGTTGAAAGCTTTGAGCATTGTTTCTTTACTTGTCCAATGGTGCAGGAGGTGTGGAAGCGATCTGGTTGCAATTTCTCAACACCTACTCTTGATGAGACACATCGTAGTTGGCTTGAGAAGCGGGTGCAGACGCATGGAGCTCTGTTTATAATTATCATGTGGTTCATCTGGTGCCACAGGAACAGACTCATCTTTGATCAGGTGGATTGGAACTTAACATCTATTCTAGCTCAAGTAAATGCTTTACTTCAAATCTCTGTTTCTGCTTTTACGAGTATTGACTGCTCGCATCGACCTCTACCCCGTTTGGTGCATTGGATTCACCCCCCACTGGATTCAGTGGCTCTGAATGTGGATGGGAGTAGGATTGGCACGCTTGGTAGAGGGGGCTTTGGTGGCTTGTGTCGGAACCATGAAGGACAGTTCCTCTTTGGCTTTTATGGCTTTTTGGGGGAGGTTTCTGTTCTTCAAACAGTGATCTTAGCTCTTCTCTACGGGACCTATTCCAATGTTTCATCGCTACGAAAATCAGCTCATGGAGATTCATCAGTTGCTCAATTGTGA 2148 0.4544 MQCFSAPIVHSETLFGIFFEEINHAGAGGIWAELVSNRGFEAGGPNTPSNIDPWSVIGNGSLINVETDRTSFFDRNKVALRLEVLCDSKGDNICPADGVGVYNPGFWGMNIEQGKKYKVVFYVRSTESLNLTVSLTGSNGVGNLASSVITGSALHFSNWTKVETLLVAKETNRNSRLQLTTTTKGVIWLDQVSAMPLDTYKGHGFRSELVEMLADLKPKFIRFPGMTALRNPKDHPPDPTIMRAWPHSIDQEPTKGIVLEGCLASKLGENPNKSTEMEMASSSDEEMDEEIHIEPQGYKMVSAEEANGHSGGIWVLVKKGIEDIVECVDTMPQCVTLKLSRGNSLFLSKKKLGSPTWRAIIQALALLEDGLVLKLGNGEIDVWQDVWVGKEPLATSVPWVDIHDSGLRVKDIWDGTSWRLDQLYTHFSETFRLKISCLTPHLVVGVPDLWTWAPDIFGKYTVRSAYRWLIEDHGLETSAGWNWIWKLSLPASLCFFLWQSCHLALPIKEVLCQRGILASNTCPKCNSAVESFEHCFFTCPMVQEVWKRSGCNFSTPTLDETHRSWLEKRVQTHGALFIIIMWFIWCHRNRLIFDQVDWNLTSILAQVNALLQISVSAFTSIDCSHRPLPRLVHWIHPPLDSVALNVDGSRIGTLGRGGFGGLCRNHEGQFLFGFYGFLGEVSVLQTVILALLYGTYSNVSSLRKSAHGDSSVAQL 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00544 715 Pfam zinc-binding in reverse transcriptase 460 546 IPR026960 -
Cca07g00544 715 SUPERFAMILY Galactose-binding domain-like 33 193 IPR008979 -
Cca07g00544 715 Gene3D - 31 194 - -
Cca07g00544 715 PANTHER ALPHA-L-ARABINOFURANOSIDASE 1 11 226 - -
Cca07g00544 715 SUPERFAMILY (Trans)glycosidases 174 225 IPR017853 -
Cca07g00544 715 PANTHER ALPHA-L-ARABINOFURANOSIDASE FAMILY PROTEIN-RELATED 11 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00544 Cca-Chr7 7758589 7768887 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00544 12 225 Glycoside Hydrolase AT3G10740 70.561 2.40e-97 314
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00544 K01209 - ccaj:109802663 723.391