Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1641 ATGGCGATTTGTTCTTTCAAGGCTTCGTTCGGTGTTTTGTTCTATTCTTTCgtgatttattttcttgcttttcaattttgttgCATTGACGCGAACTCAACTCTAGTCGTAAATGCTGCTAATAAGGCGTCTGCAAGGCTGATTCCTGACACTTTTCTTGGTGTATTCTTTGAGgAGATTAATCATGCTGGCGCTGGGGGACTGTGGGCAGAACTTGTTAGCAATAGAGgcttTGAAGCTGGAGGCCCAAACAAtaccttaaatatttttccttggTTAATTATTGGAAATGAATCATCCATTTCTGTATCAATTAACCGTAGCTCTTGCTTTGAGCGTAATAAAGCTGCATTACAAATGGAGGTGCATTGTGGTGATCACAAACCTTGCCCATCTGGTGGCGTTGGTATCTCTAACCCTGGTTACTGGGGCATGAATATTGAGCAAGGGAAGAGGTATAAGGTGGTCTATTATGTTAAATCAGAAGGAAAGTTTGATTTTCAACTTTCATTCACGGGTGTTGATGTTATAAAAGCGGCATCAAATATCACGCATGCTTTTGGAGATGGAGGATGGAACAGGTTGGAGACAATACTGGAAGCAAAAGCTACTAATCACAATTCAAGCCTTCAAATAACCACAACCACGGAAGGGAGTTACTTGTTAGACCAGGTGTCAGCTATGCCATTGGACACTTACATGGGCCATGGCTTCCGAAATGACCTTTTTCAAATGGTGGCagatttgaaaccaaaaattctCAGATTTCCGGGTGGTACTTATGTTGAAGGTGATTATCTGCAAAATAGATATCAGTGGAAAAATACTATTGGACCATGGGAAGAGAGACCTGGGCACTTTGATGACATTTGGAACTATTGGAGTGACGATGGAATTGGTTATTTAGAGTATCTCCAACTAGCAGAGGACCTTGGTACATTGCCGATATGGGTGTTTAACGCTGGTATCAGCTATCATGGTGAAATTAATACATCAGCCATAGCACCTTATGTGCAAGATGCCCTTGATGGCATTGAATTTGCAAGAGGCTCTCCTACATCAAAGTGGGGTTCTGTTAGAGCTGCAATGGGACATCCTAGACCATTTGATTTGAGATATGTTGCCGTTGGAAATGAAGATTGTGGTCATTTTAATTACCAAGgAAATTACCTTAAGTTCCATGATGCTATAAGATTTGCCTACCcagatattaaaattatctcAAATTGTGATGCTTCTACCACACCACTAAATCATTCAGCTGATTTGTTCGATTTTCATatttatacAGACTCCAAGGACATGTTTTCTATGTCTACTCACTTCGACACCACATCACGATCTGGTCCAAAGGCTTTTGTTAGTGAATATGCTGTGGTGGGAGCAGATGCTGCAAATGGAAGTCTTTTGGCTGCTGTGGCTGAAGCCGCATTTCTTATTGGACTAGAGAAGAACAGtGATGTTGTCGAGATGGTTTGTTATGCACCACTTTTCTCAAATATAAATGATAGAACGTGGATTCCCGATGCAATTGTGTTTGGCTCATATCAGGTTTATGGAACTCCTAGTTATTGGGTGCAGAAACTTTTTATCGAGTCCAGTGGAGCAACATTTCTTGACTCAACACTCAATACAACTTCATCTAATAAACTTACTGCATCCGCAATTATTTGGCAAAATTCTACAGATAGGAAAAATTACCTAAGAATAAAGGTAGTAAACTTTGGAACAACCACTGAGAGCCTTAACATTTCTATAAATGGGTTAAACTCAAATGTGCAACAATATGGTTCTACAAACACAGTGCTTACATCAACCAACGTAATGGATGAGAATTCCTTCTTAGAGCCGAAGAAGGTGGTGCCACAAACAAGTTCACTAGAGAAGGATGACAAGGACATGAATGTGATTCTCTCTCCCTATTCAGTGACATCATTGGATTTGTTAATTTGA 1953 0.385 MAICSFKASFGVLFYSFVIYFLAFQFCCIDANSTLVVNAANKASARLIPDTFLGVFFEEINHAGAGGLWAELVSNRGFEAGGPNNTLNIFPWLIIGNESSISVSINRSSCFERNKAALQMEVHCGDHKPCPSGGVGISNPGYWGMNIEQGKRYKVVYYVKSEGKFDFQLSFTGVDVIKAASNITHAFGDGGWNRLETILEAKATNHNSSLQITTTTEGSYLLDQVSAMPLDTYMGHGFRNDLFQMVADLKPKILRFPGGTYVEGDYLQNRYQWKNTIGPWEERPGHFDDIWNYWSDDGIGYLEYLQLAEDLGTLPIWVFNAGISYHGEINTSAIAPYVQDALDGIEFARGSPTSKWGSVRAAMGHPRPFDLRYVAVGNEDCGHFNYQGNYLKFHDAIRFAYPDIKIISNCDASTTPLNHSADLFDFHIYTDSKDMFSMSTHFDTTSRSGPKAFVSEYAVVGADAANGSLLAAVAEAAFLIGLEKNSDVVEMVCYAPLFSNINDRTWIPDAIVFGSYQVYGTPSYWVQKLFIESSGATFLDSTLNTTSSNKLTASAIIWQNSTDRKNYLRIKVVNFGTTTESLNISINGLNSNVQQYGSTNTVLTSTNVMDENSFLEPKKVVPQTSSLEKDDKDMNVILSPYSVTSLDLLI 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1641 650 SMART alpha_l_af_c 455 642 IPR010720 GO:0046373|GO:0046556
Ssu4g1641 650 Pfam Alpha-L-arabinofuranosidase C-terminal domain 456 642 IPR010720 GO:0046373|GO:0046556
Ssu4g1641 650 Gene3D - 531 648 IPR013780 -
Ssu4g1641 650 PANTHER ALPHA-L-ARABINOFURANOSIDASE-LIKE PROTEIN 13 650 - -
Ssu4g1641 650 Gene3D Glycosidases 218 530 - -
Ssu4g1641 650 PANTHER ALPHA-L-ARABINOFURANOSIDASE 1 13 650 - -
Ssu4g1641 650 SUPERFAMILY (Trans)glycosidases 208 538 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1641 Ssu-Chr4 28603979 28609476 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1641 1 649 Glycoside Hydrolase AT3G10740 59.758 0.0 808
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1641 K01209 - gmx:100787734 1024.62