Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1313 ATGGGTTTCTCCAAGGACTCATGGTGTGTTTTTATGCTGCAATTGTTCATAGTGGTTTGCCTTATAGTCCAAAGTTTTGATGTTAAAGTGCACGCTGATCTGAACGCGACACTAACTGTAAATGCTTCCCTAGCATCCGGAAGGCGAATACCGGATACACTTTTTGGAATATTCTTTGAGGAGATCAATCATGCTGGAGCTGGTGGATTGTGGGCTGAGCTTGTGAGCAACAGAGGATTTGAAGCTGGCGGCCCTAACACTCCTTCAAATATTGATCCTTGGTCAATAATTGGAAATGAAACATATATTAATGTTGAAACTGATCGTACATCTATCTTTGAACGTAATAAGGTTGCACTTCGATTGGAGGTGTTATGTGACAGTACTTGCCCTGCTGATGGCGTTGGCGTTTATAACCCTGGTTTCTGGGGCATGAATATTGAGCAAGGGAAGAAATACAAAGTTGTATTCTACGCTCGTTCATCAGGAGCACTTAATCTAACAGTTTCATTGACCGGATCTAACGGTGTGGGAAACTTGGCTTCAACTGTGATCACGGGTTCTGCATCCGATTTTTCAAACTGGACGAAGGTGGAGACTGTATTGGAGGCCAAGGCAACAAATGGAAACTCAAGACTTCAATTAACTACAACCACAAAGGGTGTGGTATGGTTGGACCAAGTGTCTGCTATGCCATTGGACACATATAAGGGACATGGTTTCCGAAATGATCTTTTTCAAATGGTGGCAGATATGAAACCAAGTTTTATCAGATTTCCGGGGGGTTGTTTTGTCGAAGGAGATTACTTAAGGAATGCGTTTCGTTGGAAAGCATCCGTTGGACCTTGGGAGGAGAGACCGGGACACTTCGGTGATGTATGGAAGTATTGGACTGATGATGGACTTGGCTATTATGAGTTTCTTCAACTATCAGAAGATTTGGGCGCTTTACCAATATGGGTATTTAATAATGGTGTCAGCCATAATGACGAAGTTGATACATCCTCCGTCTTACCTTTTGTGCAAGAAGCCCTTGATGGACTAGAGTTTGCGAGAGGTGATCCGACTTCAAAATGGGGTTCCCTTAGAGCTGCTATGGGACACCCGGAGCCATTTAACCTAAAATACGTTGCTGTTGGAAACGAGGATTGTGGAAAAAAGAACTATCGTGGAAACTACCTGAGATTCTACAGTGCAATACGACATGCTTATCCAGATATCCAAATTATCTCAAACTGTGACGGTTCTTCAACTCCTCTAGATCACCCTGCTGATCTGTATGATTATCATATTTATACGAACGCGAATGACATGTTTTCTAAAGCTACAGCGTTTAATCGAGTAACACGAAGTGGTCCAAAGGCATTTGTAAGTGAGTATGCGGTGACTGGAAATGATGCCGGGCAAGGAAGTCTTTTGGCAGCCCTAGCTGAAGCCGCATTCCTTATTGGAATCGAAAAAAACAGTGATATTGTCAATATGGCTAGCTATGCTCCACTTTTTGTAAATGCCAATGATCGGAGGTGGAACCCCGATGCAATCGTATTCAACTCTTTTCAGCACTACGGAACTCCTAGCTACTGGATGCAGTTATTTTTCTCAGAGTCAAATGGAGCAACATTTCTGAATTCAACACTTCAAGCGACTGCTTCAAATTCACTAATTGCATCAGCAATTACTTGGGAAAATTCTGCTGATAAGAAAACTTACATACGAATAAAGGCTGTGAACTTCGGTGCCAGCACTGTGAACCTTAAGATTTCTTTCAACGGATTAGACCCAAATTCATTGCAGTCATCTGGATCATCAAAGACTGTGCTTACATCTCCAAATTTAATGGATGAGAACTCTTTCGTGCAGCCAAAAAAGGTGGCTCCAATCAACAGTCTACTTCAAAATGTTGGGAAGGACATGAATGTGGTAGTACCACCACATTCATTCACATCACTTGATTTGTTGAAAGCATCCAGTAATCTGGAGATGCCGGGAAGTGATTCTTCATCATGGTCTTCTGTTTAA 2019 0.4225 MGFSKDSWCVFMLQLFIVVCLIVQSFDVKVHADLNATLTVNASLASGRRIPDTLFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNTPSNIDPWSIIGNETYINVETDRTSIFERNKVALRLEVLCDSTCPADGVGVYNPGFWGMNIEQGKKYKVVFYARSSGALNLTVSLTGSNGVGNLASTVITGSASDFSNWTKVETVLEAKATNGNSRLQLTTTTKGVVWLDQVSAMPLDTYKGHGFRNDLFQMVADMKPSFIRFPGGCFVEGDYLRNAFRWKASVGPWEERPGHFGDVWKYWTDDGLGYYEFLQLSEDLGALPIWVFNNGVSHNDEVDTSSVLPFVQEALDGLEFARGDPTSKWGSLRAAMGHPEPFNLKYVAVGNEDCGKKNYRGNYLRFYSAIRHAYPDIQIISNCDGSSTPLDHPADLYDYHIYTNANDMFSKATAFNRVTRSGPKAFVSEYAVTGNDAGQGSLLAALAEAAFLIGIEKNSDIVNMASYAPLFVNANDRRWNPDAIVFNSFQHYGTPSYWMQLFFSESNGATFLNSTLQATASNSLIASAITWENSADKKTYIRIKAVNFGASTVNLKISFNGLDPNSLQSSGSSKTVLTSPNLMDENSFVQPKKVAPINSLLQNVGKDMNVVVPPHSFTSLDLLKASSNLEMPGSDSSSWSSV* 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1313 672 Gene3D - 71 225 - -
Tpr6g1313 672 SUPERFAMILY (Trans)glycosidases 210 542 IPR017853 -
Tpr6g1313 672 Pfam Alpha-L-arabinofuranosidase C-terminal domain 459 646 IPR010720 GO:0046373|GO:0046556
Tpr6g1313 672 Gene3D - 533 653 IPR013780 -
Tpr6g1313 672 PANTHER ALPHA-L-ARABINOFURANOSIDASE-LIKE PROTEIN 14 653 - -
Tpr6g1313 672 SMART alpha_l_af_c 458 646 IPR010720 GO:0046373|GO:0046556
Tpr6g1313 672 PANTHER ALPHA-L-ARABINOFURANOSIDASE 1 14 653 - -
Tpr6g1313 672 Gene3D Glycosidases 226 528 - -
Tpr6g1313 672 SUPERFAMILY Galactose-binding domain-like 73 229 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1313 Tpr-Chr6 13648751 13655458 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1313 10 668 Glycoside Hydrolase AT3G10740 69.985 0.0 972
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1313 K01209 - gmx:100787207 1141.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1313 6 13648751 13655458 Tpr6g1313 6 13648751 13655458 ECH