Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1639 ATGCAGCTAATAAGGTGTCTACAAGGCGAATTCCTAACACTTTTCTTGGAGTATTCGTTGAGGAGATTAATCACGCTGGCGCTGGGGGACTGTGGGCAGAGCTTGTTAGCAATAGAGGTTATTTCCATACCCCTAAACCTTTCTTCATCTTGTCTTTCCAGTCCACAGATTCAGTTAGGCTTTGAAgctagagattttttttatttttctattattattaatttatttttaggcttaGAAGCTGGAGGCCCaaacaatatcttaaatatttatccttGGTCAATTATTGGAAATGAATCATCCATTTCGGTATCAATTAGCCGTACCTCTTGCTTTGAGCGTAATAAAGCTGCATTACATATGGAGGTGTATTGTGGTGGTCACAAACCTTGCCCATATGGTGGCGTCGGTATCTCTAACCCTGGTTATTGGGGCATGAATATTGAGCAAGGAAAGAGGTATAAGGTGGTCTATCATGTTAAATCAGAAGGAAAGTTTGATTTTCAACTTTCATTCACGGGTGTTGATGTTATAAAAGTGGCATCAAATATCATGCATGTTTTCAGACATAGAAAATGGAACAGAGTGGAGACAATACTGGAAGCAAAAGCTACTAATCATAATGCAAACCTTCAAATAACCACAACCAGGAAAGGGAGTTACTTGTTAGACCAGGTGTCAGCTATGCCATTGGATACTTACATgGGCCATGGCTTCCAACAGGACCTTTTTCAAATGGTAGCAGATTTGGAACCAAAATTTCTCAGATTTCCAGGCGGTAGTTATGTTGAAGGAGATTATCTGAAAAATCAATTTCGATGGAAAGATACTATTGGACCATGGGAGGAGAGACCTGGGCACTATGATGTTTGGAACTATTGGAGTGACGATGGATTTGGTTATTTAGAGTATCTTCAACTAGCAGAGGACCTTGGAGCAATGCCGATATGGGTGTTTAATGCTGGTATCAGTCGTCAAGAAGAAATTAATACATCAGCCATAGCGCCTTATGTGCAAGACGCCCTCGATGGCATTGAATTTGCAAGAGGCTCTCCTAGATCAAAATGGGGTTCTGTTAGAGCTGCAATGGGACATCCTAAACCATTTGACTTGAGATATGTTGCTGTTGGAAATGAAGATTGTGGGCATTTTAATTATCAAGGAAATTACCTTAAGTTCTATGCTGCAATAAGAATTGCCTACCCAGATATTCAAATTATCTCAAATTGTGATGCTTCTAGCACACCATTAAATCATCCTGCTGATTTGTTTGATTTCCATacttACACAAACGCCAGTCACATGTTTTCTCTGTCTACTTTGTTCGACCACACATCACGATCTGGTCCAAagGCTTTTGTTAGTGAATATGCTGTGTGGAGCAGAGATGCTGCAAATGGAAGTCTTTTGGCTGCGGTAGCCGAAGCCGCATTTCTTATTGGACTAGAAAAGAACAGTGATATTGTTCAGATGGTTTCTTATGCACCACTTTTCTCAAATATAAATGACAGGAaTTGGATTCCCGATGCAATTGTGTTCAACTCTTATCAACTTTATGGAACTCCTAGCTATTGGGTGCAGAAACTTTTTATTGAGTCCAGTGGAGCAACATTTATTGACTCAACACTCCTTACAACTTCATCTAATAAACTTATTGCATCTGCAATTATTTGGCAAAATtctaaagagaataaaaattacCTAAGAATAAAGGCAGTAAACTTTGGAGCAGCCACTGAGAGccttaaaatttctataaatggCTTAAACTCAAATGTGCAGCAATATGGTTCTACAATGACAGTGCTTACATCAACCAACGTAATGGATGAGAATTCCTTCTTAGAGCCGAAGAAGGTGGTGCCACAAACAAGTTCACTAGAGAAGGCTGACAAGGATATGAATGTTATTCTCTCTCCCTATTCAGTGACATCATTGGATTTGTTAATATGA 1953 0.3774 MQLIRCLQGEFLTLFLEYSLRRLITLALGDCGQSLLAIEVISIPLNLSSSCLSSPQIQLGFEARDFFYFSIIINLFLGLEAGGPNNILNIYPWSIIGNESSISVSISRTSCFERNKAALHMEVYCGGHKPCPYGGVGISNPGYWGMNIEQGKRYKVVYHVKSEGKFDFQLSFTGVDVIKVASNIMHVFRHRKWNRVETILEAKATNHNANLQITTTRKGSYLLDQVSAMPLDTYMGHGFQQDLFQMVADLEPKFLRFPGGSYVEGDYLKNQFRWKDTIGPWEERPGHYDVWNYWSDDGFGYLEYLQLAEDLGAMPIWVFNAGISRQEEINTSAIAPYVQDALDGIEFARGSPRSKWGSVRAAMGHPKPFDLRYVAVGNEDCGHFNYQGNYLKFYAAIRIAYPDIQIISNCDASSTPLNHPADLFDFHTYTNASHMFSLSTLFDHTSRSGPKAFVSEYAVWSRDAANGSLLAAVAEAAFLIGLEKNSDIVQMVSYAPLFSNINDRNWIPDAIVFNSYQLYGTPSYWVQKLFIESSGATFIDSTLLTTSSNKLIASAIIWQNSKENKNYLRIKAVNFGAATESLKISINGLNSNVQQYGSTMTVLTSTNVMDENSFLEPKKVVPQTSSLEKADKDMNVILSPYSVTSLDLLI 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1639 650 SUPERFAMILY (Trans)glycosidases 211 538 IPR017853 -
Ssu4g1639 650 Pfam Alpha-L-arabinofuranosidase C-terminal domain 456 642 IPR010720 GO:0046373|GO:0046556
Ssu4g1639 650 SMART alpha_l_af_c 455 642 IPR010720 GO:0046373|GO:0046556
Ssu4g1639 650 PANTHER ALPHA-L-ARABINOFURANOSIDASE 1 78 650 - -
Ssu4g1639 650 PANTHER ALPHA-L-ARABINOFURANOSIDASE-LIKE PROTEIN 78 650 - -
Ssu4g1639 650 Gene3D Glycosidases 219 533 - -
Ssu4g1639 650 Gene3D - 535 648 IPR013780 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1639 Ssu-Chr4 28477271 28482292 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1639 78 649 Glycoside Hydrolase AT3G10740 62.218 0.0 751
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1639 K01209 - gmx:100787734 939.873