Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02146 ATGACTTCCTCTAAAGCTTCTTGCAGTTTTCTTAGGATCTATCTCATTATAGTTTCTTGTCTTGCATTTCAATGTAATGCTGATGACCAAATTTCAACTCTATTTGTAAATGCTTCTCATGGATCTGGAAGGCCTATTCCTAACACTCTTTTTGGAATTTTTTTTGAGGAGATCAATCATGCGGGTACAGGGGGATTATGGGCGGAACTTGTGAACAATAGAGGGTTTGAAGCCGGGGGAAGGCAGTTTCTGTCAAATATTGATCCTTGGACCATAGTTGGAACAGAATCATCAGTTTTAGTACAAACTGAGCTTAGTTCTTGTTTTGAACACAATAAGGTTGCTTTAAGAATTGATGTGCTATGTGACAAGTGTCCTTCTCATGGTGTTGGAATATCTAACCCGGGTTTTTGGGGCATGAATATTGTGAAAGGGAAGAAATACAAAGTAGTGTTCTTTGTTCGTTCCATAGGAGCACTAGATATGACAATATCATTCAGAAAAGCACAAGATGGAGAAATATTGGCTTCTAGCAATGTCAAAGATTCTGCATTAGAAGTTTCAAATTGGAAAAGGATGGAAACAACATTAGAAGCAACTGCATCAAGTTTTAATTCAAATCTTGCCTTAACAACAACTCAAAAAGGGAAGATATGGTTGGATCAAATATCTGCTATGCCCGTCAACACATTTAAGGGACATGGTTTCAGAAGTGATTTGGTTGAAATGATGTTACAGTTGAAGCCAGCTTTTCTAAGGTTTCCAGGTGGTTGTTTTGTTGAAGGAAAAACATTAAGAAACGCATTTAGGTGGAAAGATAGTGTTGGACCATGGGAACAAAGGCCTGGACACTTTGGTGATGTTTGGAATTATTGGACAGATGATGCACTTGGTTATTTTGAGGGTCTTCAACTAGCGGAGGACATTGGTGCAGCACCCGTGTGGGTCTTCAACAACGGTATAAGCCATACTGATGAAATTGATACAAGAGTCATTGCACCTTTTGTCCAAGAAGCACTTGATGGTATTGAGTTTGCTAGAGGAAAAGCCACTTCAACATGGGGATCCCTTAGAGCATCTATGGGACATCCAGAACCTTTTAACCTAAAATATGTTGGTGTTGGAAATGAAGATTGTGGAAAACTAAATTACCATGGAAATTACCTAGCCTTCTACAATGCAATTCGACGTGTTTATCCAGATATCCAAATCATTTCAAATTGTGACGCTTCTCTCAAGCCATTAGATCATCCAGCCGATTTGTATGATTATCATACTTATCCTTTTGAAGCTCAACGTATGTTTAGTAATGCTCGTGTTTTTGATAAGACACCACGCAATGGACCAAAGGCTTTTGTGAGTGAGTATGCTCTAATTGGAGAGAAACAAGCTAAGCAAGGAACCCTTTTGGGAGCTGTGTCTGAAGCTGGATTCCTTATTGGATTAGAAACAAACAGTGATCATGTTGTAATGGCAAGCTATGCACCACTTTTTGTAAATGCACATGACAGAATGTGGAACCCAGATGCAATTGTTTTTGACAACAATCAAGCTTATGGTACTCCTAGCTATTGGGTGCAGTATATGTTTAGAGAGTCAAATGGAGCAATATTTCTCAACTCACAACTTCGCAACACTGATCTCAACTCAGTGGCTGCATCTGCAATTCTTTGCCATAATCCTCAAAATAATAGTACTTACTTAAAAATAAAGATCGCAAACATAGGAAACAATAAAGTGAAACTCAAGATTTCTCTTGATGGATTTGGGAGTAAGATTGGAACTGCGTCAACAAAGACCGTACTCACATCTAAAAATGCATTAGATGAGAATAGCTTCTTAGATCCAAAAAAGATAACACCACAACAAAGTCAACTTAAGAGTCTTTCCAATGAGATGAATGTCATAATTCCTCCAGTTTCATTAACAGTATTTGATATGTTAAGATAG 1950 0.3805 MTSSKASCSFLRIYLIIVSCLAFQCNADDQISTLFVNASHGSGRPIPNTLFGIFFEEINHAGTGGLWAELVNNRGFEAGGRQFLSNIDPWTIVGTESSVLVQTELSSCFEHNKVALRIDVLCDKCPSHGVGISNPGFWGMNIVKGKKYKVVFFVRSIGALDMTISFRKAQDGEILASSNVKDSALEVSNWKRMETTLEATASSFNSNLALTTTQKGKIWLDQISAMPVNTFKGHGFRSDLVEMMLQLKPAFLRFPGGCFVEGKTLRNAFRWKDSVGPWEQRPGHFGDVWNYWTDDALGYFEGLQLAEDIGAAPVWVFNNGISHTDEIDTRVIAPFVQEALDGIEFARGKATSTWGSLRASMGHPEPFNLKYVGVGNEDCGKLNYHGNYLAFYNAIRRVYPDIQIISNCDASLKPLDHPADLYDYHTYPFEAQRMFSNARVFDKTPRNGPKAFVSEYALIGEKQAKQGTLLGAVSEAGFLIGLETNSDHVVMASYAPLFVNAHDRMWNPDAIVFDNNQAYGTPSYWVQYMFRESNGAIFLNSQLRNTDLNSVAASAILCHNPQNNSTYLKIKIANIGNNKVKLKISLDGFGSKIGTASTKTVLTSKNALDENSFLDPKKITPQQSQLKSLSNEMNVIIPPVSLTVFDMLR 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02146 649 Gene3D Glycosidases 209 528 - -
Vifa5g02146 649 SMART alpha_l_af_c 454 641 IPR010720 GO:0046373|GO:0046556
Vifa5g02146 649 SUPERFAMILY (Trans)glycosidases 207 538 IPR017853 -
Vifa5g02146 649 FunFam Alpha-L-arabinofuranosidase 1 223 531 - -
Vifa5g02146 649 Pfam Alpha-L-arabinofuranosidase C-terminal domain 455 641 IPR010720 GO:0046373|GO:0046556
Vifa5g02146 649 Gene3D - 529 648 IPR013780 -
Vifa5g02146 649 PANTHER ALPHA-L-ARABINOFURANOSIDASE 1 1 648 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02146 Vifa-Chr5 715189812 715193821 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02146 1 649 Glycoside Hydrolase AT3G10740 58.939 0.0 795
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02146 K01209 - gmx:100780771 1001.89