Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00315 ATGGAAGTGCATTGTAGTCATCACAACCCTTGTCCAATTGGTGGCGTTGGTATCTCTAACCCTGGTTATTGGGGGATGAATATTGAGCAAGGAAAGTGGTACAAGGTGGTCTATCATGTTAAATCAAAACGAAAGTTTGATTTTCAACTTTCATTCTCAGGTGTTGATGTTATAAAGGTGTCATCAAATATAACGAAAGTTTCTGAAAATGGAAAATGGAAAAGAGTAGAGACAGTAGTGAAAGCAAATGCTACCAATCACAATTCAAGTCTTCAAATAACCACAACCCGTAAAGGGAATTACATGTTAGACCAAGTGTCAGTTATGCCATTGGACACTCACATGGGTCATGGCTATCGAAAGGATCTTTTTCAAATGGTGGCAGATTTGAAACCAAAATTTATCAGAATTCCTGGTATGTCCCAATTCTATGATTCCAAGAGAGGTGGCACATTTGTTGAAGGAGATTATCTGAAAAATCAATATTGGTGGAAGGATACAATTGGACCATGGGAAAGGAGACCTGGGCACTTCAATGATATTTGGAACTATTGGAGTGATGATGGCATTGGTTATTTAGAGTATCTTCAACTAGCAGAGGACCTTGGTGCATTGCCCATATGGGTGTTCAATGCTGGTTTCAGCCGTCATGAACAAATTAATACATCAGATATAGCACCTTATGTGCAAGATGCCCTTGATGGCATTGAATTTGCAAGAGGCTCTCCTAAATCAGAGTGGGGTTCTGTTAGAGCTGGATTAGGACATCCTAAACCATTTGATTTGAGATATGTTGCTGTTGGAAATGAAGATTGTGAGTTTGCTAATTACCAAGGAAATTACCTTAAGTTCCATGATGCTATAAGATCTGTCTATCCAGACATTAAAATCATCTCAAATTGTGATGCTTCTGGTGCACCATTAAATCATTCAGCTGATTTGTTCGATTTTCATATTTATACAAACTCCAATGATATGTTTTCTAAGTCTACTCAATTCGATAACACATCACGATCTGGTCCAAAGGCTTTTGTAAGTGAGTATGCTGTATGGAGAGAAGATGCTGCAAATGGAAGTCTTCTGGCTGCTGTGGCTGAAGCTGCATTTCTTATTGGGCTAGAAAAGAATAGATGGATTCCCGATGCAATTGTGTTCGACTCTTATCAGCTTTATGGAACACCCAGCTATTGGGTGCAAAAGCTTTTCATTGAGTCTAGTGGAGCAACATATATTGACTCGACACTCAACACAACTTCATCTAATCAACTTATTGCATCTGCAATTAGTTGGAAAAATTCTACAGATAAGAAAAATTACATAAGAATAAAGGTAGTAAACTTCGGAGCAACCACAGAGCCACTTGACATATACATACACGGGTTTCCTGAAAAGCAACAATTTGGTTCTACAAAGACAATGCTTACATCAACCAACATAATGGATGAAAATTCCTTCTCACAACCTTGGAAGGTGGTGCCACAAACAAGTTCAATAGTGAATGTTCATGAGAGGATACAAGAAGTTCTCTCTCCCTATTCAGTCACATCATTCGATTTAATTTATTAG 1566 0.3819 MEVHCSHHNPCPIGGVGISNPGYWGMNIEQGKWYKVVYHVKSKRKFDFQLSFSGVDVIKVSSNITKVSENGKWKRVETVVKANATNHNSSLQITTTRKGNYMLDQVSVMPLDTHMGHGYRKDLFQMVADLKPKFIRIPGMSQFYDSKRGGTFVEGDYLKNQYWWKDTIGPWERRPGHFNDIWNYWSDDGIGYLEYLQLAEDLGALPIWVFNAGFSRHEQINTSDIAPYVQDALDGIEFARGSPKSEWGSVRAGLGHPKPFDLRYVAVGNEDCEFANYQGNYLKFHDAIRSVYPDIKIISNCDASGAPLNHSADLFDFHIYTNSNDMFSKSTQFDNTSRSGPKAFVSEYAVWREDAANGSLLAAVAEAAFLIGLEKNRWIPDAIVFDSYQLYGTPSYWVQKLFIESSGATYIDSTLNTTSSNQLIASAISWKNSTDKKNYIRIKVVNFGATTEPLDIYIHGFPEKQQFGSTKTMLTSTNIMDENSFSQPWKVVPQTSSIVNVHERIQEVLSPYSVTSFDLIY* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00315 521 Gene3D - 404 519 IPR013780 -
Lapu1g00315 521 SMART alpha_l_af_c 346 513 IPR010720 GO:0046373|GO:0046556
Lapu1g00315 521 SUPERFAMILY (Trans)glycosidases 89 410 IPR017853 -
Lapu1g00315 521 Gene3D Glycosidases 97 403 - -
Lapu1g00315 521 FunFam Alpha-L-arabinofuranosidase 1 403 520 - -
Lapu1g00315 521 PANTHER ALPHA-L-ARABINOFURANOSIDASE 1 1 376 - -
Lapu1g00315 521 Pfam Alpha-L-arabinofuranosidase C-terminal domain 377 513 IPR010720 GO:0046373|GO:0046556
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00315 Lapu-Chr1 12121495 12124880 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00315 1 520 Glycoside Hydrolase AT3G10740 55.147 0.0 605
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00315 K01209 - gmx:100787734 765.763