Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0547 ATGTCGTTCTATTCTTTAAAGGCTACATGCAATGTCATGCTCTATTCCTTGATACTTTATCTTCTTGCTTTTCGTTGTTGTGTCGATGCTAACCAAACATCAATATTAGTTGTAAATGCTACTTCTAACTTATCGGCAAGGCGAATTCCAGATACCCTGTTTGGAGTATTCCTAGAGGAGATTAATCATGGTGTTACTGGGGGATTATGGGCAGAACTTGTCAAAAATAGAGGTTTTGAAGCTGGTCGTGGAACCTCAAATATTTATCCATGGTCAACTATTGGAGATAACTCATCCATTTCTATTTCAACTGATCTTACCTCTTGCTTTAAAAGGAATCAGGTTGCATTAAAAATGAAAGTGCTTTGTGGTGGCACTAAACCTTGTCCATCTGGTGGGGTTGGAATTTCTAATCCTGGTTATTGGGGCATGAATATTGAGGAAGGGAAGAAGTATCAAATAGTATTCTATGTTAAAGCCTTAGCAGTGGCTGATTTACAAATATCATTCACCGGAGCTAATGATGTAAAACTTGCAACACTTAATGTCTCTGTTGGTAGTACTACAAATTGGACAAGAATAGCGAATACATTGGAAGCCAAGGCAACATTCCATAATGCTAGCCTACGAATAACAACAACAACTAAAGGTGTTTATTGGTTAGATCAAGTATCAGCTATGCCTGTGGACACATATAAGGGTAATGGCTTCCGAAATGACCTATTCCAAATGGTGGCAGACTTAAAACCAAGGTTTCTAAGATTTCCCGGTGGTACCTTCGTCGAAGGAGATAGTCTACGCAATGCATATAGGTGGAAAGAAACCGTTGGACCATGGGAGGAAAGACCTGGTCACTATAATGATATATGGAACTATTGGACTGATGATGGCTTTGGTTATTTTGAGGGCCTGCAGCTAGCTGAGGACCTTAATGCATTGCCAATATGGGTGTTTAATGCTGGTATAAGCCGTCATGAGGAAGTTAATTCAACGGAACTTTCACCTTATGTTCAAGATGCCCTAGATAGCATTGAGTTTGCAAGAGGTTCTAATGCAACAAAATGGGGTTCTCTTAGAGCAGCTATGGGACATCCTAAACCATTTGACTTGAGATATGTAGCAATAGGAAATGAAGATTGTGGGTTGAAAAACTATGAAGGCATGACTTCTTCATATTCTTATGCAAAATTATTAATACATATTTTTTTTTTTGTTGTATTTTCAGAAAACTATGGTATAATCTACAATAAAATAAGATCTGTCTATCCAGATGTTCGAATTATCTCAAATTGTGATGGTTCAGAAGGACCAATAAATCAACCAGCTGATTTGTTTGAATATCATCTTTATTCAAATTCTAAGGATATGTTTTCAAAGTCTAGTAGATTCGACAACACATCACGATCTGGCCCAAAGGGTTTTGTTAGTGAGTATGCTGTGTGGAAGGAAGATGCTGGAATGGGAACCCTTATTGCTGCAGTGTCAGAAGCAGCATTTCTTATTGGACTAGAAAAGAATAGTGATATTGTGGAGATGGCTTGCTATGCACCACTTTTCCTGAATATAAATGACAAGAAGTGGCTTCCTGATGCAATTGTGTTTGACTCTTATCAACATTATGGAACTCCAAGCTATTGGATGCAGAAATTTTTTATAGAGTCAAATGGAGCAATATTTCTCCCCTCAACTCTCCAAACAAATTCATCAAACTCAGTTATTGCATCTGCAATTAATTTCAAAGGGTCTAAGGCCAATGAAAATTACATAAGAATAAAGGTAGTGAACTTCGGAGTTGCCACTGAAAACCTCCACATTTCTGTAACTGGATTGAACTCAACTGTTAAACAACTTGGTTCAACAAAGACAGTGTTGACATCTTCAAACACAATGGATGAAAATTCATTCTCAGAGCCAAATAAGATTGTGCCCCATCAAAGTCCGCTTGAAAATGCTGCTCAGAAAATGAATGTTACACTCCCTCCCTATTCAGTGACATCATTTGATTTGTTAATTTAG 2016 0.3765 MSFYSLKATCNVMLYSLILYLLAFRCCVDANQTSILVVNATSNLSARRIPDTLFGVFLEEINHGVTGGLWAELVKNRGFEAGRGTSNIYPWSTIGDNSSISISTDLTSCFKRNQVALKMKVLCGGTKPCPSGGVGISNPGYWGMNIEEGKKYQIVFYVKALAVADLQISFTGANDVKLATLNVSVGSTTNWTRIANTLEAKATFHNASLRITTTTKGVYWLDQVSAMPVDTYKGNGFRNDLFQMVADLKPRFLRFPGGTFVEGDSLRNAYRWKETVGPWEERPGHYNDIWNYWTDDGFGYFEGLQLAEDLNALPIWVFNAGISRHEEVNSTELSPYVQDALDSIEFARGSNATKWGSLRAAMGHPKPFDLRYVAIGNEDCGLKNYEGMTSSYSYAKLLIHIFFFVVFSENYGIIYNKIRSVYPDVRIISNCDGSEGPINQPADLFEYHLYSNSKDMFSKSSRFDNTSRSGPKGFVSEYAVWKEDAGMGTLIAAVSEAAFLIGLEKNSDIVEMACYAPLFLNINDKKWLPDAIVFDSYQHYGTPSYWMQKFFIESNGAIFLPSTLQTNSSNSVIASAINFKGSKANENYIRIKVVNFGVATENLHISVTGLNSTVKQLGSTKTVLTSSNTMDENSFSEPNKIVPHQSPLENAAQKMNVTLPPYSVTSFDLLI 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0547 671 SUPERFAMILY (Trans)glycosidases 210 566 IPR017853 -
Lal10g0547 671 PANTHER ALPHA-L-ARABINOFURANOSIDASE 1 407 671 - -
Lal10g0547 671 PANTHER ALPHA-L-ARABINOFURANOSIDASE 1 11 388 - -
Lal10g0547 671 SUPERFAMILY Glycosyl hydrolase domain 543 667 - -
Lal10g0547 671 Gene3D Glycosidases 223 551 - -
Lal10g0547 671 SMART alpha_l_af_c 476 663 IPR010720 GO:0046373|GO:0046556
Lal10g0547 671 Gene3D - 560 669 IPR013780 -
Lal10g0547 671 PANTHER ALPHA-L-ARABINOFURANOSIDASE-LIKE PROTEIN 11 388 - -
Lal10g0547 671 PANTHER ALPHA-L-ARABINOFURANOSIDASE-LIKE PROTEIN 407 671 - -
Lal10g0547 671 Gene3D - 70 222 - -
Lal10g0547 671 Pfam Alpha-L-arabinofuranosidase C-terminal domain 477 663 IPR010720 GO:0046373|GO:0046556
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0547 Lal-Chr10 13029525 13036285 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0547 6 670 Glycoside Hydrolase AT3G10740 56.889 0.0 779
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0547 K01209 - gmx:100812703 858.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0939 8 7089205 7100614 Lal10g0547 10 13029525 13036285 LSH