Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g01888 ATGAAGTTTGATTCCTTCATGGAAGGTCATAGGTATAGTAATACTTCTTCTTATCATTGTGTGTATGTTAAGAAATTCTTTGATGGTGATTTTATAATTCTCTTACTTTATGTTGATGCTATGTTGATTGTTGGCCATGACACTAAGAAGATTGATAGTCTCAAGAAAGACTTGAACAGATCCTTTGCTATGAAGGATTTGGGTCCTGCAAAGAAAATCTTTGGCCGGAAATTGCTCATGCCGTTGGAGTTGTTAGTCAGTTTTTCTCTAATCCTGGCAAAGAACACTGGCAAGGAACACTGGCAAGCAGTGAAGTGGATTCTCAGATACCTTAATGGTACTTCTAGAGTTTGTTTATGCTTTGGAAGTGGCCAACCTGTGTTGGATGGTTACACAGATATGGATATGGCTGGGAATCTTGATTCAAGAAAGTATACTTTTGGTTATATGATGACTTTTGCAGGGGGAGCTGTGTCGTGGCAATCTCGACTTCAGAAATGTGTTGCTTTGTCTACTACAGAGGCAGAATACATTGCCGTTGTTAaagcttctaagaaactcttTGTTCTCTGCCTCTACATTATTATCATAGTGGCTAATTCTCTTGCTTTTCAATGTTCTGCTGCTGCTTCTTCTTCTAATAATAATGATCAGATTTCAACTTTAGTTGTGAATGCTTCTATTGCATCTAGAAGGAGAATGCCAGATACTTTATTTGGAATATTTTTTGAGGAGATCAATCATGCTGGAGCTGGAGGATTGTGGGCTGAGCTTGTGAGTAACAGAGGTTTTGAAGCTGGGGGCACCCAAGTTCCATCAAATATTAAACCTTGGAGTATAGTTGGAGAAGAATCATGTATTTTAGTGCAAACAGAACTCAATTCTTGCTTTGAACGCAATAAGGTTGCATTGAGAATGGATGTGTTATGTGATGATATTAATTGCCCTTCCGGCGGTGTTGGTATCTCTAATCCCGGTTACTGGGGCATGacaaaaaaatcaaagataatttttttttttAATTCAACAACCAAAATCTCACGGGGTGAAAAGACATTCTCAAACTGGAAAAGGATCGAGACTACGTTGGAGGCGAATGGATCAAGTGCTAATTCAACCATTCAAATAACAACCACCAAGAAAGGCGTCATATGGTTGGACCAAGTTTCTGCCATGCCCCTTGACACGTTTAATGGACATGGTTTCCGAAAAGACTTAGTCAACATGCTGATAGAGTTGAAACCAGCCTTTATTAGATTTCCAGGTGGTTGCTTCGTAGAAGGACAAAGACTAAGTAATGCATTTAGGTGGAAAGAGAGTGTTGGGCCATGGGAGCAGAGACCAGGCCACTTTGGCGATGTTTGGAATTATTGGACTGATGATGCTTTTGGTTATTtttttagtattaaaaCAGAGGACATTGGTGCAAAACCAATATGGGTCTTTAACAATGGTATTAGCCATACTGATGAAGTTGATACAAGCGCCATCAAGCCTTTTGTGCAAGATACCGTAGATGGTATTGAGTTTGCGAGAGGAGCAGCCACTTCGCAATGGGGTTCCCTTAGAGTTGCTATGGGGCACCCTAAGCCTTTTGACCTAAAATATGTCGCTATTGGAAATGAAAATTGTGGAAAGCAACACTACCAAGGCATGCATTATTTCTTTCCCCCTAATTTTTCGTGGAATTACCTTGCGTTCTACAATGCAATAAAACATGCTTATCCAGATATTAAGATTGTTTCAAATTGTGATGCTTCCTCCAAGCCGTTAGATCACCCCGCTGATTTGTACGAGTATCATACGTATCCTCATGACGCTCGAAGTATGTTTAATAACGCTCAGGTGTTTGATAACACACCACGTAATGGTCCAAAGGCTTTTGTGAGTGAGTATGCTCTAATTGGAGAGGAACAAGCCAAGCTTGGGACCCTTTTAGGAGCTGTATCTGAAGCTGGATTTCTTATTGGATTAGAAAGAAACAGTGATCACGTGGCAATGGCTTCGTATGCTCCCCTTTTTGTAAATGCAAATGACAGGAAGTGGAACCCAGATGCAATTGTTTTTAATGCGAATAAGGTTTATGGAACACCAAGCTATTGGGTGCAGTACATGTTTAGAGAGTCAAGTAAGGGTGCAACATTTCTTGAATCACAGCTTCAAACAACAGATCCTACTTCACTTGCTGCATCTGCAATTCTCTGCCAAAATCCTCAAAATAACAAAACTTCCCTAAAGATAAAGGTTGCAAACATGAGAAGTGACCAAGTGAATCTCAAGATTTCTGTTGAGGGATATGCTACATCAAATCTTACTGAGTCAACAATTACTGTACTAACATCTATCAATGCATTGGATGAGAATACTTTCTCAGACCCAAAAAAGGTAGTACCAAAACGAAGTCCATTTCAGAGAGCTGGTAAGGAGATGAATTTCATAATCCCTCCAATTTCATTGACCGTATTTGACTTGTTATAA 2478 0.391 MKFDSFMEGHRYSNTSSYHCVYVKKFFDGDFIILLLYVDAMLIVGHDTKKIDSLKKDLNRSFAMKDLGPAKKIFGRKLLMPLELLVSFSLILAKNTGKEHWQAVKWILRYLNGTSRVCLCFGSGQPVLDGYTDMDMAGNLDSRKYTFGYMMTFAGGAVSWQSRLQKCVALSTTEAEYIAVVKASKKLFVLCLYIIIIVANSLAFQCSAAASSSNNNDQISTLVVNASIASRRRMPDTLFGIFFEEINHAGAGGLWAELVSNRGFEAGGTQVPSNIKPWSIVGEESCILVQTELNSCFERNKVALRMDVLCDDINCPSGGVGISNPGYWGMTKKSKIIFFFNSTTKISRGEKTFSNWKRIETTLEANGSSANSTIQITTTKKGVIWLDQVSAMPLDTFNGHGFRKDLVNMLIELKPAFIRFPGGCFVEGQRLSNAFRWKESVGPWEQRPGHFGDVWNYWTDDAFGYFFSIKTEDIGAKPIWVFNNGISHTDEVDTSAIKPFVQDTVDGIEFARGAATSQWGSLRVAMGHPKPFDLKYVAIGNENCGKQHYQGMHYFFPPNFSWNYLAFYNAIKHAYPDIKIVSNCDASSKPLDHPADLYEYHTYPHDARSMFNNAQVFDNTPRNGPKAFVSEYALIGEEQAKLGTLLGAVSEAGFLIGLERNSDHVAMASYAPLFVNANDRKWNPDAIVFNANKVYGTPSYWVQYMFRESSKGATFLESQLQTTDPTSLAASAILCQNPQNNKTSLKIKVANMRSDQVNLKISVEGYATSNLTESTITVLTSINALDENTFSDPKKVVPKRSPFQRAGKEMNFIIPPISLTVFDLL 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g01888 825 SUPERFAMILY (Trans)glycosidases 372 712 IPR017853 -
Adu06g01888 825 CDD RNase_HI_RT_Ty1 130 187 - -
Adu06g01888 825 Gene3D - 708 824 IPR013780 -
Adu06g01888 825 SUPERFAMILY Glycosyl hydrolase domain 697 823 - -
Adu06g01888 825 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 3 76 IPR013103 -
Adu06g01888 825 PANTHER ALPHA-L-ARABINOFURANOSIDASE-LIKE PROTEIN 190 344 - -
Adu06g01888 825 PANTHER ALPHA-L-ARABINOFURANOSIDASE-LIKE PROTEIN 344 825 - -
Adu06g01888 825 PANTHER ALPHA-L-ARABINOFURANOSIDASE 1 190 344 - -
Adu06g01888 825 PANTHER ALPHA-L-ARABINOFURANOSIDASE 1 344 825 - -
Adu06g01888 825 Pfam Alpha-L-arabinofuranosidase C-terminal domain 631 818 IPR010720 GO:0046373|GO:0046556
Adu06g01888 825 SMART alpha_l_af_c 630 818 IPR010720 GO:0046373|GO:0046556
Adu06g01888 825 Gene3D Glycosidases 379 707 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g01888 Adu-Chr6 79783784 79808050 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g01888 184 825 Glycoside Hydrolase AT3G10740 56.502 0.0 744
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g01888 K01209 - gmx:100780771 924.08