Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00314 ATGGCGTTTTGTTCTCTCAAGCCTTGGTTTGGTGTTATGCTCTATTCCCTTCTGATTCATTTTCTTACATTTCAACATTGCTGTGCTGATGCGAACTCAACACTGGTTGTAAATGCTTCCTTTGACAAGGCGAATGCAAGGCGAATTCCTCACAGTTTTCTTGGAGTGTTCTTTGAGGAGATAAATCATGCTGGAGCTGGAGGACTGTGGGCAGAACTTGTCAGCAATAGAGGATTTGAAGCTGGAGGACCAGACAACACCTTAAACATTTATCCTTGGTCAGTTATTGGAGATGAGTCGTCCATTTCTGTAACAATTAACCATGCCTCTTGCTTTGAGCATAATAAAGCCGCATTACAAATGAATGTGTATTGTGGTGGTCACAAACCATGTCCATATGGTGGCGTTGGTATCTCTAATCCTGGTTATTGGGGCATGAATTTTGAGCAAGGAAAGAGGTATAAGGTGGTCTACCATGTTAAATCAGAAACAAAGTTTGATTTTCAGCTTTCATTCACGGGTATTGATTTTATAAAAGTAGCATCAAATACCAGGCATGCTTTTGGAGATAGAAAATGGAAAAGGGTGGAGACAATAGTGGAAGCAAAAGCTACTAATCACTATTCAAGTCTTCAAATAACCACAACCAGTGAAGGAAGATTCTTATTAGACCAGGTGTCAGTTATGCCATTGGACACTCATATGGGCCATGGCTTCAGAAAGGACCTTTTTCAAATGGTGGCAGATTTGAAACCAAAATTTCTCAGATTTCCTGGTGGTACTTATGTTGAAGGTGATCATCTGCGAAACAGATATCAGTGGAAAGATACAGTTGGACCATGGGAGGAGAGACCTGGACACTTTGATGATATTTGGAACTATTGGAGTGACGATGGAATTGGTTATTTTGAGTATCTCCAACTAGCAGAGGACCTTGGTGCATTGCCCATATGGGTATTTAACGCTGGTATCAGCGTTCATGAAGAAATTAATGCATCAGCCATAGCTCCTTATGTGCAAGATGCCCTAGATGGCATTGAATTTGCAAGAGGATCTCCTAAATCAAAATGGGGTTCTGTTAGAGCTGCAATGGGACATCCTAAACCATTTGACTTGAGATATATTGCTGTTGGAAATGAAGATTGTTGGCATTTTAATTATCAAGGAAATTACCTTAAATTTTATGAGGCTATAAGATCTGCCAACCCAGATATTCAAATTATCTCAAATTGTGATGCTTCTAGCGCACCATTAAAACATCCAGCCGATTTATTTGATTTTCATATTTATACAGACTCCAATGATATGTTTTCTAAGTCCACTCAGTTCGATCACACATCACGATCTGGTCCAAAGGCTTTTGTGAGTGAGTATGCTGTGTGGAAAGAAGATGCTGCAAATGGAAGTCTTTTGGCTGCTATAGCTGAAGCCGCGTTTCTAATTGGACTAGAGAAGAACAGTGATATTGTCCAGATGGTTTCTTATGCGCCACTTTTCTCAAACATAAATGACAGGAGATGGATTCCCGATGCAATTGTGTTTAACTCTTGTCAGCTCTATGGAACTCCTAGCTATTGGGTGCAGAAACTTTTTATTGAGTCTAGTGGAGCAACATTTCTTGACTCAACACTCTTCACAACTTCATCTAATAAACTTATTGCATCTGCAATTATTTGGGAAAATTCTACCGAGAAGAAAAATTATCTAAGAATAAAGGTAGTAAACTATGGAACAGACACAGAGAGCCTTAACATTTATACAAATGGGTTGAACTCAAATGTGCAACAATTTGGTTCTACAAAGACAGTCCTTGCATCAACCAACGTAATGGATGAGAATTCCTTCTTGGAACCCCAAAAGGTGGTGCCTCAAACAAGTTCACTAGAGAAGGCTGACAAGTACATGAGTGTTATACTCTCTTCCTATTCGGTGACATCATTAGATTTGTTACTATGA 1956 0.3942 MAFCSLKPWFGVMLYSLLIHFLTFQHCCADANSTLVVNASFDKANARRIPHSFLGVFFEEINHAGAGGLWAELVSNRGFEAGGPDNTLNIYPWSVIGDESSISVTINHASCFEHNKAALQMNVYCGGHKPCPYGGVGISNPGYWGMNFEQGKRYKVVYHVKSETKFDFQLSFTGIDFIKVASNTRHAFGDRKWKRVETIVEAKATNHYSSLQITTTSEGRFLLDQVSVMPLDTHMGHGFRKDLFQMVADLKPKFLRFPGGTYVEGDHLRNRYQWKDTVGPWEERPGHFDDIWNYWSDDGIGYFEYLQLAEDLGALPIWVFNAGISVHEEINASAIAPYVQDALDGIEFARGSPKSKWGSVRAAMGHPKPFDLRYIAVGNEDCWHFNYQGNYLKFYEAIRSANPDIQIISNCDASSAPLKHPADLFDFHIYTDSNDMFSKSTQFDHTSRSGPKAFVSEYAVWKEDAANGSLLAAIAEAAFLIGLEKNSDIVQMVSYAPLFSNINDRRWIPDAIVFNSCQLYGTPSYWVQKLFIESSGATFLDSTLFTTSSNKLIASAIIWENSTEKKNYLRIKVVNYGTDTESLNIYTNGLNSNVQQFGSTKTVLASTNVMDENSFLEPQKVVPQTSSLEKADKYMSVILSSYSVTSLDLLL* 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00314 651 FunFam Alpha-L-arabinofuranosidase 1 532 650 - -
Lapu1g00314 651 Gene3D Glycosidases 217 534 - -
Lapu1g00314 651 SMART alpha_l_af_c 456 643 IPR010720 GO:0046373|GO:0046556
Lapu1g00314 651 PANTHER ALPHA-L-ARABINOFURANOSIDASE 1 16 650 - -
Lapu1g00314 651 SUPERFAMILY (Trans)glycosidases 211 539 IPR017853 -
Lapu1g00314 651 Pfam Alpha-L-arabinofuranosidase C-terminal domain 457 643 IPR010720 GO:0046373|GO:0046556
Lapu1g00314 651 Gene3D - 535 649 IPR013780 -
Lapu1g00314 651 FunFam Alpha-L-arabinofuranosidase 1 226 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00314 Lapu-Chr1 12087788 12092893 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00314 34 650 Glycoside Hydrolase AT3G10740 60.386 0.0 783
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00314 K01209 - gmx:100787734 1040.8