Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1462 ATGGAGCTTACATTGGTACCTACTGAATCAAGTTCTAATGCAACCCTTCAGTTAACAACAACTCAAAAGGGTGTCATATGGTTGGACCAAGTGTCAGCTATGCCTGTGGACACTTTTAAGGGCCATGGTTTCCGAACTGACTTGGTCAACATGGTCTTAGAGTTGAAACCTGCCTTTATTAGATTTCCAGGTGGTTGTTTTATTGAAGGACAAACACTTAGAAACGCTTTTAGGTGGAAGGATAGTGTTGGACCTTGGGAAGAGAGGCCAGGGCACTTTGGCGATGTTTGGGGTTCCTGGACAGATGAAGGATTAGGATATTTTGAGGGTCTTCAACTTGCTGAGGATATTGGTACAAAGCCAATTTGGGTATTCAACAATGGCATCAGTCATACTGATCAAATTGATACAAGCGTCATCACACCTTTTGTCCAAGAAGCCCTTGATGGTATTGAGTTTGCCAGAGGTCCAGCCACTTCTAAATGGGGTTCTCTTAGAAAATCAATGGGGCACCCAGAGCCTTTTGACCTAAAGTATGTTGCTATTGGAAATGAAGATTGTGGAAAGAAAAACTACCTAGGAAACTACTTAGCATTTTACAAAGCTATACGGAAGGCATATCCTGATATTGAAATGATTTCAAATTGTGATGCTTCTTCTGAGCCATTGGATCACCCAACTGATTTGTATGACTATCATACTTACCCTAATAATCCTTCAAACATGTTCAACAATGCACATGTGTTTGATAAGACGCCCCGCGATGGTCCAAAGGCTTTTGTGAGTGAGTATGCTCTAGTTGGAGACCAATATGCTAAGTATGGAACCCTTATAGGAGGTGTGTCTGAAGCTGGCTTCCTTATTGGATTAGAAAGAAACAGTGATCATGTAGCAATGGCTGCTTATGCACCACTTTTTGTAAATGCAAATGATAGGAAGTGGAACCCAGATGCAATTGTTTTTAACTCAAATCAAGCTTATGGAACTCCTAGCTACTGGGTGACACATATGTTTAGAGAGTCAAATGGAGCAACATTTCTTAACTCAACACTTCAAACACCTGATCCTTCCTCATTTGATGCATCAGCAATTCTTTGGCAAAATTCTGTAGATAAGAAAACCTACTTAAAAATAAAGGTTGCAAACTTGGGGAACAACAAAGTGAAACTCAAAATTATTGTTCGCGGATTGGAGAGCCCAAAAATAATTGGGACAAAGACTGTGCTCACATCTGTAAATGCATTGGATGAGAATAGTTTCTTAGTACCAAGAAAGGTAATACCAAGACAAAGACCATTTCATCCTCGTCACAACAAGATGAAGGTCTTAATCCCTCCAATTTCAGTTACAGCATTGGATTTTTTAAAATAA 1371 0.3982 MELTLVPTESSSNATLQLTTTQKGVIWLDQVSAMPVDTFKGHGFRTDLVNMVLELKPAFIRFPGGCFIEGQTLRNAFRWKDSVGPWEERPGHFGDVWGSWTDEGLGYFEGLQLAEDIGTKPIWVFNNGISHTDQIDTSVITPFVQEALDGIEFARGPATSKWGSLRKSMGHPEPFDLKYVAIGNEDCGKKNYLGNYLAFYKAIRKAYPDIEMISNCDASSEPLDHPTDLYDYHTYPNNPSNMFNNAHVFDKTPRDGPKAFVSEYALVGDQYAKYGTLIGGVSEAGFLIGLERNSDHVAMAAYAPLFVNANDRKWNPDAIVFNSNQAYGTPSYWVTHMFRESNGATFLNSTLQTPDPSSFDASAILWQNSVDKKTYLKIKVANLGNNKVKLKIIVRGLESPKIIGTKTVLTSVNALDENSFLVPRKVIPRQRPFHPRHNKMKVLIPPISVTALDFLK* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1462 456 Pfam Alpha-L-arabinofuranosidase C-terminal domain 263 448 IPR010720 GO:0046373|GO:0046556
Lja1g1462 456 SUPERFAMILY (Trans)glycosidases 13 346 IPR017853 -
Lja1g1462 456 PANTHER ALPHA-L-ARABINOFURANOSIDASE 1 1 455 - -
Lja1g1462 456 SUPERFAMILY Glycosyl hydrolase domain 329 453 - -
Lja1g1462 456 Gene3D Glycosidases 20 337 - -
Lja1g1462 456 Gene3D - 338 454 IPR013780 -
Lja1g1462 456 PANTHER ALPHA-L-ARABINOFURANOSIDASE-LIKE PROTEIN 1 455 - -
Lja1g1462 456 SMART alpha_l_af_c 262 448 IPR010720 GO:0046373|GO:0046556
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1462 Lja-Chr1 15760446 15765496 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1462 2 456 Glycoside Hydrolase AT3G10740 61.438 0.0 586
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1462 K01209 - gmx:100780771 738.028