Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03291 ATGAGAGAAAAGATGACTATGATGAAGATATTTCTTATCTACTTGAGCTGCTTCGTACTATGCTGTTATGCAAAGGAAAGGTCAACAACATTGCACATAAATGGGACGGAAGGAGCTGGGAGAAAAATTCCAGATACATTCTTCGGAGCATTTTTTGAGGAAATAAACCATGCAGGAGCTGGGGGATTGTGGGCGGAGCTTGTTCGAAACCGAGGTTTCGAAGAAGGAGGGTCAAGTGTTCCATCAAATATATTTCCATGGACAATGGTGGGAGATGATTCAACCATACACATCTCAACTGATCGTAGCTCTTGCTTCGATCGAAACAAAGTTGCATTGCGTATGGATGTTCTCTGTGATGGACCCAAATCTTGCCCACCTGATGGTGTTGGCATCTCAAATCCTGGTTTCTGGGGCATGAATATTGAGAAAGCACACAAGTATAAAGTAGTGTTCTTTACCAAAGCAAGTGGTGCGGTTGATCTTCAAGTCTCGTTTGTTGGATCAGATAATACCGAGTTGGCATCAAACAGCATTGGGTCTTTCGGTGAGAATGTTACAGAGTGGAAGAGGATGGAGACCGTACTGGAAGCGAAGGCAACTGACCACAATGCAAGTCTCCAAATAACGACAAGCAAGAAAGGAGTTTTATGGTTAGATCAAGTTTCAGCAATGCCAGTAGACACGTACAAGGGTCATGGATTCCGAAAGGACCTTGCTCAGAGGGTGGCCGATTTGAAGCCTAAATTTTTCAGATTTCCTGGTGGATGTTACGTTGAAGGAGGTTATATGAGAAACGCATTCAGATGGAAAGACAGCGTGGGAGCATGGGAGGAGAGACCTGGTCACTTCGGAGACGTTTGGGGTTATTGGACCGATGATGGTTTTGGCTATTTTGAAGGCCTTCAATTCTCTGAGGATATCGGTGCATTGCCAGTGTGGGTGTTTAACGATGGTCTCAGCCTTACTGACGAAGTGGATACTTCTATGATCGGACCTTTTATTCAAGAAGCTCTGGATGGACTTGAGTTTGCAAAGGGTTCGGCAAAGTCAAAATGGGGATCTCTAAGGGCTTCCATGGGACATCCCGACCCATTCGATCTCAGAATTGTTGCCATTGGAAACGAAGAGTGCGCCATGTCTAAGTATAGAGGAAACTACCTCAAATTTTATGATGCCATCAAGCAAGCTTATCCAGATATTCAGATTATCTCTAACTGCGATGCTTCTCAAAAACCTTTGGATCATCCAGCTGATTTCTACGATTTTCATATTTATACAAATGCCGACGACATGTTTTCGAAGCATACGAAATTCGATGACGCACCACGATACGGTCCAAAGGCGTTTGTGAGTGAGTATGCAGTTTGGCGATCGGACGCTGGGAATGGAACTCTTCTTGCTGCCGTGGCTGAAGCTGCATTCCTTATTGGATTGGAAAAGAATAGTGACGTTGTTCACATGGTTAGCTATGCACCGCTGTTCGTAAACAAAAACGACAGAAGGTGGACACCGGATGCAATTGTATTTGACTCTCACCAGAGCTATGGAACTCCCAGCTATTGGATTCAACATTTTTTTAGCAGTTCAAGTGGAGCAACTTTGCTATATTCAAATCTTGAAAGCAGTTCCGATAAGATAGTTGCATCAGCAATCGAATTCACAAATCCTTCAGATAATAAAAAGTATTTGAGAATTAAAGTTGTAAACTTTGACAGTGTTCCACACAAGTTTAGGTTTTGTATCGATTTGAAGGTAAAAGGATATGGAGCAACCAAAACAGTGATAACAGGGCCTAACGTTAAAGAAGAAAATTCCTTTTCAGAACCAAACAGGATTATTCCACAACACGCTTCTCTCCAGAACCCTTCTTCAGACATGACTCTCATTCTTCCTCCTTACTCCTTTTCTTCCTTTGATCTCTTCATTTAA 1932 0.4275 MREKMTMMKIFLIYLSCFVLCCYAKERSTTLHINGTEGAGRKIPDTFFGAFFEEINHAGAGGLWAELVRNRGFEEGGSSVPSNIFPWTMVGDDSTIHISTDRSSCFDRNKVALRMDVLCDGPKSCPPDGVGISNPGFWGMNIEKAHKYKVVFFTKASGAVDLQVSFVGSDNTELASNSIGSFGENVTEWKRMETVLEAKATDHNASLQITTSKKGVLWLDQVSAMPVDTYKGHGFRKDLAQRVADLKPKFFRFPGGCYVEGGYMRNAFRWKDSVGAWEERPGHFGDVWGYWTDDGFGYFEGLQFSEDIGALPVWVFNDGLSLTDEVDTSMIGPFIQEALDGLEFAKGSAKSKWGSLRASMGHPDPFDLRIVAIGNEECAMSKYRGNYLKFYDAIKQAYPDIQIISNCDASQKPLDHPADFYDFHIYTNADDMFSKHTKFDDAPRYGPKAFVSEYAVWRSDAGNGTLLAAVAEAAFLIGLEKNSDVVHMVSYAPLFVNKNDRRWTPDAIVFDSHQSYGTPSYWIQHFFSSSSGATLLYSNLESSSDKIVASAIEFTNPSDNKKYLRIKVVNFDSVPHKFRFCIDLKVKGYGATKTVITGPNVKEENSFSEPNRIIPQHASLQNPSSDMTLILPPYSFSSFDLFI 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03291 643 FunFam Alpha-L-arabinofuranosidase 1 222 528 - -
Vimu6g03291 643 SUPERFAMILY Galactose-binding domain-like 66 224 IPR008979 -
Vimu6g03291 643 PANTHER ALPHA-L-ARABINOFURANOSIDASE 1 10 641 - -
Vimu6g03291 643 Gene3D - 82 219 - -
Vimu6g03291 643 SMART alpha_l_af_c 452 635 IPR010720 GO:0046373|GO:0046556
Vimu6g03291 643 Gene3D Glycosidases 220 530 - -
Vimu6g03291 643 Gene3D - 544 642 IPR013780 -
Vimu6g03291 643 SUPERFAMILY (Trans)glycosidases 207 535 IPR017853 -
Vimu6g03291 643 Pfam Alpha-L-arabinofuranosidase C-terminal domain 453 635 IPR010720 GO:0046373|GO:0046556
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03291 Vimu-Chr6 29457998 29460603 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03291 28 642 Glycoside Hydrolase AT3G10740 61.935 0.0 823
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03291 K01209 - gmx:100802745 998.423